View Dialogue in 2D: A Two-stream Model in Time-speaker Perspective for Dialogue Summarization and beyond. - Keli Xie; Dongchen He; Jiaxin Zhuang; Siyuan Lu 002; Zhongfeng Wang 001 (COLING, 2022)

RiboDiffusion: tertiary structure-based RNA inverse folding with generative diffusion models. - Han Huang; Ziqian Lin; Dongchen He; Liang Hong; Yu Li 006 (Bioinform., 2024)

Deep generative design of RNA aptamers using structural predictions. - Felix Wong; Dongchen He; Aarti Krishnan; Liang Hong; Alexander Z. Wang; Jiuming Wang; Zhihang Hu; Satotaka Omori; Alicia Li; Jiahua Rao; Qinze Yu; Wengong Jin; et al. (Nat. Comput. Sci., 2024)

Benchmarking Large Language Models on Multiple Tasks in Bioinformatics NLP with Prompting. - Jiyue Jiang; Pengan Chen; Jiuming Wang; Dongchen He; Ziqin Wei; Liang Hong; Licheng Zong; Sheng Wang; Qinze Yu; Zixian Ma; Yanyu Chen; Yimin Fan; et al. (CoRR, 2025)

DS-ProGen: A Dual-Structure Deep Language Model for Functional Protein Design. - Yanting Li; Jiyue Jiang; Zikang Wang; Ziqian Lin; Dongchen He; Yuheng Shan; Yanruisheng Shao; Jiayi Li; Xiangyu Shi; Jiuming Wang; Yanyu Chen; Yimin Fan; et al. (CoRR, 2025)