DAS-DDI: A dual-view framework with drug association and drug structure for drug-drug interaction prediction. - Dongjiang Niu; Lianwei Zhang; Beiyi Zhang; Qiang Zhang; Zhen Li 024 (J. Biomed. Informatics, 2024)

SRR-DDI: A drug-drug interaction prediction model with substructure refined representation learning based on self-attention mechanism. - Dongjiang Niu; Lei Xu; Shourun Pan; Leiming Xia; Zhen Li 024 (Knowl. Based Syst., 2024)

FSRM-DDIE : few-shot learning methods based on relation metrics for the prediction of drug-drug interaction events. - Lianwei Zhang; Dongjiang Niu; Beiyi Zhang; Qiang Zhang; Zhen Li 024 (Appl. Intell., 2024)

MSH-DTI: multi-graph convolution with self-supervised embedding and heterogeneous aggregation for drug-target interaction prediction. - Beiyi Zhang; Dongjiang Niu; Lianwei Zhang; Qiang Zhang; Zhen Li (BMC Bioinform., 2024)

MAPTrans: mutual attention transformer with dynamic meta-path pruning for drug repositioning. - Shanyang Ding; Dongjiang Niu; Xiaofeng Wang; Zhixin Zhang; Qunhao Zhang; Jun Xiao; Zhen Li (Briefings Bioinform., 2025)

Drug-drug interaction prediction based on graph contrastive learning and dual-view fusion. - Shanyang Ding; Dongjiang Niu; Mingxuan Li; Zhixin Zhang; Zhen Li 024 (Comput. Biol. Chem., 2025)

Property-Guided Few-Shot Learning for Molecular Property Prediction With Dual-View Encoder and Relation Graph Learning Network. - Lianwei Zhang; Dongjiang Niu; Beiyi Zhang; Qiang Zhang; Zhen Li 024 (IEEE J. Biomed. Health Informatics, 2025)

Multilevel cross-domain relational network for drug repositioning. - Dongjiang Niu; Xiaofeng Wang; Zengqian Deng; Bowen Tang; Zhen Li 024 (Pattern Recognit., 2026)