eQTL Mapping for Functional Classes of Saccharomyces cerevisiae Genes with Multivariate Sparse Partial Least Squares Regression. - Dongjun Chung; Sündüz Keles (Handbook of Statistical Bioinformatics, 2011)

Robust classification ensemble method for microarray data. - Dongjun Chung; Hyunjoong Kim (Int. J. Data Min. Bioinform., 2011)

Discovering Transcription Factor Binding Sites in Highly Repetitive Regions of Genomes with Multi-Read Analysis of ChIP-Seq Data. - Dongjun Chung; Pei Fen Kuan; Bo Li 015; Rajendran Sanalkumar; Kun Liang 001; Emery H. Bresnick; Colin N. Dewey; Sündüz Keles (PLoS Comput. Biol., 2011)

dPeak: High Resolution Identification of Transcription Factor Binding Sites from PET and SET ChIP-Seq Data. - Dongjun Chung; Dan Park; Kevin Myers; Jeffrey Grass; Patricia J. Kiley; Robert Landick; Sündüz Keles (PLoS Comput. Biol., 2013)

Accurate ensemble pruning with PL-bagging. - Dongjun Chung; Hyunjoong Kim (Comput. Stat. Data Anal., 2015)

graph-GPA: A graphical model for prioritizing GWAS results and investigating pleiotropic architecture. - Dongjun Chung; Hang J. Kim; Hongyu Zhao 003 (PLoS Comput. Biol., 2017)

Improving SNP prioritization and pleiotropic architecture estimation by incorporating prior knowledge using graph-GPA. - Hang J. Kim; Zhenning Yu; Andrew Lawson; Hongyu Zhao 003; Dongjun Chung (Bioinform., 2018)

Predicting daily outcomes in acetaminophen-induced acute liver failure patients with machine learning techniques. - Jaime Lynn Speiser; Constantine J. Karvellas; Bethany J. Wolf; Dongjun Chung; David G. Koch; Valerie L. Durkalski (Comput. Methods Programs Biomed., 2019)

BiMM tree: a decision tree method for modeling clustered and longitudinal binary outcomes. - Jaime Lynn Speiser; Bethany J. Wolf; Dongjun Chung; Constantine J. Karvellas; David G. Koch; Valerie L. Durkalski (Commun. Stat. Simul. Comput., 2020)

PALMER: improving pathway annotation based on the biomedical literature mining with a constrained latent block model. - Jin Hyun Nam 001; Daniel Couch; Willian A. da Silveira; Zhenning Yu; Dongjun Chung (BMC Bioinform., 2020)

IRIS-FGM: an integrative single-cell RNA-Seq interpretation system for functional gene module analysis. - Yuzhou Chang; Carter Allen; Changlin Wan; Dongjun Chung; Chi Zhang 021; Zihai Li; Qin Ma 003 (Bioinform., 2021)

Graph-based Trajectory Visualization for Text Mining of COVID-19 Biomedical Literature. - Yeseul Jeon; Dongjun Chung; Jina Park; Ick-Hoon Jin (CoRR, 2021)

GPA-Tree: statistical approach for functional-annotation-tree-guided prioritization of GWAS results. - Aastha Khatiwada; Bethany J. Wolf; Ayse Selen Yilmaz; Paula S. Ramos; Maciej Pietrzak; Andrew Lawson; Kelly J. Hunt; Hang J. Kim; Dongjun Chung (Bioinform., 2022)

LRT: Integrative analysis of scRNA-seq and scTCR-seq data to investigate clonal differentiation heterogeneity. - Juan Xie; Hyeongseon Jeon; Gang Xin; Qin Ma 003; Dongjun Chung (PLoS Comput. Biol., 2023)

Inference of disease-associated microbial gene modules based on metagenomic and metatranscriptomic data. - Zhaoqian Liu; Qi Wang; Anjun Ma; Shaohong Feng; Dongjun Chung; Jing Zhao; Qin Ma 003; Bingqiang Liu (Comput. Biol. Medicine, 2023)

multi-GPA-Tree: Statistical approach for pleiotropy informed and functional annotation tree guided prioritization of GWAS results. - Aastha Khatiwada; Ayse Selen Yilmaz; Bethany J. Wolf; Maciej Pietrzak; Dongjun Chung (PLoS Comput. Biol., 2023)

Collaborative Job Seeking for People with Autism: Challenges and Design Opportunities. - Zinat Ara; Amrita Ganguly; Donna Peppard; Dongjun Chung; Slobodan Vucetic; Vivian Genaro Motti; Sungsoo Ray Hong (CHI, 2024)

Network-based Topic Structure Visualization. - Yeseul Jeon; Jina Park; Ick-Hoon Jin; Dongjun Chung (CoRR, 2024)

Collaborative Design for Job-Seekers with Autism: A Conceptual Framework for Future Research. - Sungsoo Ray Hong; Marcos Zampieri; Brittany N. Hand; Vivian Motti 001; Dongjun Chung; Özlem Uzuner (CoRR, 2024)

Analysis of community connectivity in spatial transcriptomics data. - Juan Xie; Kyeong Joo Jung; Carter Allen; Yuzhou Chang; Subhadeep Paul; Zihai Li; Qin Ma 003; Dongjun Chung (Frontiers Appl. Math. Stat., 2024)