MDGA: motif discovery using a genetic algorithm. - Dongsheng Che; Yinglei Song; Khaled Rasheed (GECCO, 2005)

BEST: Binding-site Estimation Suite of Tools. - Dongsheng Che; Shane T. Jensen; Liming Cai; Jun S. Liu (Bioinform., 2005)

Operon Prediction in Microbial Genomes Using Decision Tree Approach. - Dongsheng Che; Jizhen Zhao; Liming Cai; Ying Xu 001 (CIBCB, 2007)

Comparative Pathway Prediction Via Unified Graph Modeling of Genomic Structure Information. - Jizhen Zhao; Dongsheng Che; Liming Cai (ISBRA, 2007)

Comparative Pathway Annotation with Protein-DNA Interaction and Operon Information via Graph Tree Decomposition. - Jizhen Zhao; Dongsheng Che; Liming Cai (Pacific Symposium on Biocomputing, 2007)

PFP: A Computational Framework for Phylogenetic Footprinting in Prokaryotic Genomes. - Dongsheng Che; Guojun Li; Shane T. Jensen; Jun S. Liu; Ying Xu 001 (ISBRA, 2008)

Computational methods for deciphering genomic structures in prokaryotes. - Dongsheng Che (2008)

Classification of Genomic Islands Using Decision-tree Based Algorithms. - Dongsheng Che; Cory Hockenbury; Robert E. Marmelstein; Khaled Rasheed (BIOCOMP, 2009)

Haplotype inference using a genetic algorithm. - Dongsheng Che; Haibao Tang; Yinglei Song (CIBCB, 2009)

A Universal operon Predictor for prokaryotic genomes. - Guojun Li; Dongsheng Che; Ying Xu 001 (J. Bioinform. Comput. Biol., 2009)

A Multi-Objective Evolutionary Approach for Haplotype Inference. - Priyadarshini Lakshminarasimhan; Qi Liu; Robert E. Marmelstein; Mary Devito; Dongsheng Che (BIOCOMP, 2010)

Brain MRI Image Segmentation using Fuzzy C-Means Clustering. - Yong Wei; H. Keith Brown; Xiuping Tao; Samuel Moore; Dongsheng Che; Junfeng Qu (IPCV, 2010)

An Integrative Approach for Genomic Island Prediction in Prokaryotic Genomes. - Han Wang; John Fazekas; Matthew Booth; Qi Liu 019; Dongsheng Che (ISBRA, 2011)

Integrated QSAR study for inhibitors of hedgehog signal pathway against multiple cell lines: a collaborative filtering method. - Jun Gao; Dongsheng Che; Vincent Wenchen Zheng; Ruixin Zhu; Qi Liu 019 (BMC Bioinform., 2012)

Applications of Machine Learning in Genomics and Systems Biology. - Chunmei Liu; Dongsheng Che; Xumin Liu; Yinglei Song (Comput. Math. Methods Medicine, 2013)

An evolutionary computing approach for mining most frequent subgraph by using size value evaluation. - Abdullah Almethen; Dongsheng Che (ICNC, 2015)

Understanding the Wine Judges and Evaluating the Consistency Through White-Box Classification Algorithms. - Bernard Chen 001; Hai Le; Christopher Rhodes; Dongsheng Che (ICDM, 2016)

Discovering genomic islands in microbial genomes using a genetic algorithm. - Dongsheng Che; Pingsheng Gao; Pu Tian; Bernard Chen 001 (ICNC-FSKD, 2017)

Classification of endangered languages using decision tree based algorithms. - Dongsheng Che; Taylor Shafer; Pu Tian (ICNC-FSKD, 2017)

A Wineinformatics Study for White-box Classification Algorithms to Understand and Evaluate Wine Judges. - Bernard Chen 001; Hai Le; Travis Atkison; Dongsheng Che (Trans. Mach. Learn. Data Min., 2017)