Quantifying the Impact of Non-coding Variants on Transcription Factor-DNA Binding. - Jingkang Zhao; Dongshunyi Li; Jungkyun Seo; Andrew S. Allen; Raluca Gordân (RECOMB, 2017)

Identifying signaling genes in spatial single-cell expression data. - Dongshunyi Li; Jun Ding; Ziv Bar-Joseph (Bioinform., 2021)

Unsupervised Cell Functional Annotation for Single-Cell RNA-Seq. - Dongshunyi Li; Jun Ding; Ziv Bar-Joseph (RECOMB, 2022)

UNIFAN: A Tool for Unsupervised Single-Cell Clustering and Annotation. - Dongshunyi Li; Jun Ding; Ziv Bar-Joseph (J. Comput. Biol., 2022)