Procleave: Predicting Protease-specific Substrate Cleavage Sites by Combining Sequence and Structural Information. - Fuyi Li; André Leier; Quanzhong Liu; Yanan Wang 003; Dongxu Xiang; Tatsuya Akutsu; Geoffrey I. Webb; Alexander Ian Smith; Tatiana T. Marquez-Lago; Jian Li 052; Jiangning Song (Genom. Proteom. Bioinform., 2020)

Porpoise: a new approach for accurate prediction of RNA pseudouridine sites. - Fuyi Li; Xudong Guo; Peipei Jin; Jinxiang Chen; Dongxu Xiang; Jiangning Song; Lachlan J. M. Coin (Briefings Bioinform., 2021)

Anthem: a user customised tool for fast and accurate prediction of binding between peptides and HLA class I molecules. - Shutao Mei; Fuyi Li; Dongxu Xiang; Rochelle Ayala; Pouya Faridi; Geoffrey I. Webb; Patricia T. Illing; Jamie Rossjohn; Tatsuya Akutsu; Nathan P. Croft; Anthony W. Purcell; Jiangning Song (Briefings Bioinform., 2021)

Comprehensive assessment of machine learning-based methods for predicting antimicrobial peptides. - Jing Xu 008; Fuyi Li; André Leier; Dongxu Xiang; Hsin-Hui Shen; Tatiana T. Marquez-Lago; Jian Li 052; Dong-Jun Yu; Jiangning Song (Briefings Bioinform., 2021)

Computational identification of eukaryotic promoters based on cascaded deep capsule neural networks. - Yan Zhu 006; Fuyi Li; Dongxu Xiang; Tatsuya Akutsu; Jiangning Song; Cangzhi Jia (Briefings Bioinform., 2021)