Non-linear Integration of DTI-based Fiber Tracts into Standard 3D MR Data. - Dorit Merhof; Peter Hastreiter; Grzegorz Soza; Christopher Nimsky (VMV, 2004)

Enhanced Visualization of Diffusion Tensor Data for Neurosurgery. - Frank Enders; Dorit Merhof; Peter Hastreiter; Marc Stamminger; Christopher Nimsky (Bildverarbeitung für die Medizin, 2005)

Rekonstruktion und Visualisierung neuronaler Bahnen. - Peter Hastreiter; Dorit Merhof; Frank Enders; Rudolf Fahlbusch; Christopher Nimsky; Marc Stamminger (GI Jahrestagung (2), 2005)

Directional volume growing for the extraction of white matter tracts from diffusion tensor data. - Dorit Merhof; Peter Hastreiter; Christopher Nimsky; Rudolf Fahlbusch; G. Greiner (Image-Guided Procedures, 2005)

Integrated Visualization of Diffusion Tensor Fiber Tracts and Anatomical Data. - Dorit Merhof; Frank Enders; Fernando Vega; Peter Hastreiter; Christopher Nimsky; Marc Stamminger (SimVis, 2005)

Visualization of White Matter Tracts with Wrapped Streamlines. - Frank Enders; Natascha Sauber; Dorit Merhof; Peter Hastreiter; Christopher Nimsky; Marc Stamminger (IEEE Visualization, 2005)

Streamline Visualization of Diffusion Tensor Data Based on Triangle Strips. - Dorit Merhof; Markus Sonntag; Frank Enders; Christopher Nimsky; Peter Hastreiter; Günther Greiner (Bildverarbeitung für die Medizin, 2006)

Fast and Accurate Connectivity Analysis Between Functional Regions Based on DT-MRI. - Dorit Merhof; Mirco Richter; Frank Enders; Peter Hastreiter; Oliver Ganslandt; Michael Buchfelder; Christopher Nimsky; Günther Greiner (MICCAI (2), 2006)

Visualization Strategies for Major White Matter Tracts for Intraoperative Use. - Christopher Nimsky; Oliver Ganslandt; Frank Enders; Dorit Merhof; Thilo Hammen; Michael Buchfelder (Int. J. Comput. Assist. Radiol. Surg., 2006)

Intraoperative visualization of the pyramidal tract by diffusion-tensor-imaging-based fiber tracking. - Christopher Nimsky; Oliver Ganslandt; Dorit Merhof; A. Gregory Sorensen; Rudolf Fahlbusch (NeuroImage, 2006)

Hybrid Visualization for White Matter Tracts using Triangle Strips and Point Sprites. - Dorit Merhof; Markus Sonntag; Frank Enders; Christopher Nimsky; Peter Hastreiter; Günther Greiner (IEEE Trans. Vis. Comput. Graph., 2006)

Reconstruction and visualization of neuronal pathways from diffusion tensor data. - Dorit Merhof (2007)

Generation of Hulls Encompassing Neuronal Pathways Based on Tetrahedralization and 3D Alpha Shapes. - Dorit Merhof; Martin Meister 001; Ezgi Bingöl; Peter Hastreiter; Christopher Nimsky; Günther Greiner (Bildverarbeitung für die Medizin, 2007)

Anisotropic quadrilateral mesh generation: An indirect approach. - Dorit Merhof; Roberto Grosso; Udo Tremel; Günther Greiner (Adv. Eng. Softw., 2007)

Correction of susceptibility artifacts in diffusion tensor data using non-linear registration. - Dorit Merhof; Grzegorz Soza; Andreas Stadlbauer; Günther Greiner; Christopher Nimsky (Medical Image Anal., 2007)

Fiber Selection from Diffusion Tensor Data based on Boolean Operators. - Dorit Merhof; Günther Greiner; Michael Buchfelder; Christopher Nimsky (Bildverarbeitung für die Medizin, 2010)

Evaluation of Hippocampal Segmentation Methods for Healthy and Pathological Subjects. - Courtney A. Bishop; Mark Jenkinson; Jérôme Declerck; Dorit Merhof (VCBM, 2010)

Anisotropy of HARDI Diffusion Profiles Based on the L2-Norm. - Philipp Landgraf; Dorit Merhof; Mirco Richter (Bildverarbeitung für die Medizin, 2011)

Evaluation of Local Filter Approaches for Diffusion Tensor-Based Fiber Tracking. - Dorit Merhof; Michael Buchfelder; Christopher Nimsky (Bildverarbeitung für die Medizin, 2011)

HiTSEE: A visualization tool for hit selection and analysis in high-throughput screening experiments. - Enrico Bertini; Hendrik Strobelt; Joachim Braun; Oliver Deussen; Ulrich Groth; Thomas U. Mayer; Dorit Merhof (BioVis, 2011)

Automated Image Processing for the Analysis of DNA Repair Dynamics - Thorsten Riess; Christian Dietz; Martin Tomas; Elisa Ferrando-May; Dorit Merhof (CoRR, 2011)

Novel Fast Marching for Automated Segmentation of the Hippocampus (FMASH): Method and validation on clinical data. - Courtney A. Bishop; Mark Jenkinson; Jesper L. R. Andersson; Jérôme Declerck; Dorit Merhof (NeuroImage, 2011)

INCIDE the brain of a bee: Visualising honeybee brain activity in real time by semantic segmentation. - Martin Strauch; Marc P. Broeg; Clemens Müthing; Paul Szyszka; Oliver Deussen; C. Giovanni Galizia; Dorit Merhof (BioVis, 2012)

Diffusionsbildgebung -Trends und aktuelle Entwicklungen. - Dorit Merhof; Diana Röttger; Christopher Nimsky (GI-Jahrestagung, 2012)

Visualization and Evaluation of Intra-Bundle Diffusion Characteristics. - Diana Röttger; Daniela Dudai; Dorit Merhof; Stefan Müller 002 (GI-Jahrestagung, 2012)

Skeleton-based gyri sulci separation for improved assessment of cortical thickness. - Mirco Richter; Courtney A. Bishop; Juergen Dukart; Elisabeth Stühler; Karsten Mueller 002; Matthias L. Schroeter; Dorit Merhof (ISBI, 2012)

Bundle Visualization Strategies for HARDI Characteristics. - Diana Röttger; Daniela Dudai; Dorit Merhof; Stefan Müller 002 (ISVC (1), 2012)

ISMI: a classification index for high angular resolution diffusion imaging. - Diana Röttger; Daniela Dudai; Dorit Merhof; Stefan Müller 002 (Image Processing, 2012)

The BundleExplorer: A Focus and Context Rendering Framework for Complex Fiber Distributions. - Diana Röttger; Dorit Merhof; Stefan Müller 002 (VCBM, 2012)

Instant visitation maps for interactive visualization of uncertain particle trajectories. - Kai Bürger; Roland Fraedrich; Dorit Merhof; Rüdiger Westermann (Visualization and Data Analysis, 2012)

HiTSEE KNIME: a visualization tool for hit selection and analysis in high-throughput screening experiments for the KNIME platform. - Hendrik Strobelt; Enrico Bertini; Joachim Braun; Oliver Deussen; Ulrich Groth; Thomas U. Mayer; Dorit Merhof (BMC Bioinform., 2012)

Optimized Cortical Subdivision for Classification of Alzheimer's Disease With Cortical Thickness. - Mirco Richter; Dorit Merhof (Bildverarbeitung für die Medizin, 2013)

Automated Image Processing to Quantify Cell Migration. - Minmin Shen; Bastian Zimmer; Marcel Leist; Dorit Merhof (Bildverarbeitung für die Medizin, 2013)

Automatic framework for tracking honeybee's antennae and mouthparts from low framerate video. - Minmin Shen; Paul Szyszka; C. Giovanni Galizia; Dorit Merhof (ICIP, 2013)

The looks of an odour - Visualising neural odour response patterns in real time. - Martin Strauch; Clemens Müthing; Marc P. Broeg; Paul Szyszka; Daniel Münch; Thomas Laudes; Oliver Deussen; Cosmas Galizia; Dorit Merhof (BMC Bioinform., 2013)

Interactive 3D Segmentation of Pleural Thickenings Simultaniously at Different Points of Time Using Graph Cut. - Peter Faltin; Phan-Anh Nguyen; Kraisorn Chaisaowong; Thomas Kraus; Dorit Merhof (Bildverarbeitung für die Medizin, 2014)

Segmentierung von Zellkernen für Hochdurchsatz-DNA-Bildzytomerie. - David Friedrich; Christoph Haarburger; Adrián Luna Cobos; Dietrich Meyer-Ebrecht; Alfred Böcking; Dorit Merhof (Bildverarbeitung für die Medizin, 2014)

Robustness analysis of imaging system for inspection of laser beam melting systems. - Joschka zur Jacobsmühlen; Stefan Kleszczynski; Gerd Witt; Dorit Merhof (ETFA, 2014)

High precision on-loom yarn density measurement in woven fabrics. - Dorian Schneider; Dorit Merhof (I2MTC, 2014)

Interactive Framework for Insect Tracking with Active Learning. - Minmin Shen; Wei Huang 013; Paul Szyszka; C. Giovanni Galizia; Dorit Merhof (ICPR, 2014)

Text recognition for information retrieval in images of printed circuit boards. - Wei Li 052; Stefan Neullens; Matthias Breier; Marcel Bosling; Thomas Pretz; Dorit Merhof (IECON, 2014)

Rotation estimation for printed circuit board recycling. - Matthias Breier; Wei Li 052; Marcel Bosling; Thomas Pretz; Dorit Merhof (IECON, 2014)

Consistent follow-up segmentation of pleural thickenings. - Peter Faltin; Kraisorn Chaisaowong; Thomas Kraus; Dorit Merhof (ISBI, 2014)

Efficient numerical reconstruction of color Doppler images of mitral regurgitation in vitro. - Wei Li 052; Simon J. Sonntag; Michael Becker 003; Nikolaus Marx; Ulrich Steinseifer; Dorit Merhof (ISBI, 2014)

Detection of felt tip markers on microscope slides. - David Friedrich; Dietrich Meyer-Ebrecht; Alfred Böcking; Dorit Merhof (Digital Pathology, 2014)

Extracting and Visualizing Uncertainties in Segmentations from 3D Medical Data. - Peter Faltin; Kraisorn Chaisaowong; Thomas Kraus; Dorit Merhof (VCBM, 2014)

A traverse inspection system for high precision visual on-loom fabric defect detection. - Dorian Schneider; Timm Holtermann; Dorit Merhof (Mach. Vis. Appl., 2014)

Foreground Extraction for Histopathological Whole Slide Imaging. - Daniel Bug; Friedrich Feuerhake; Dorit Merhof (Bildverarbeitung für die Medizin, 2015)

Spherical Ridgelets for Multi-Diffusion Tensor Refinement. - Simon Koppers; Thomas Schultz 001; Dorit Merhof (Bildverarbeitung für die Medizin, 2015)

Skew correction and line extraction in binarized printed text images. - Wei Li 052; Matthias Breier; Dorit Merhof (ICIP, 2015)

Accurate laser triangulation using a perpendicular camera setup to assess the height profile of PCBs. - Matthias Breier; Philipp Moller; Wei Li 052; Marcel Bosling; Thomas Pretz; Dorit Merhof (ICIT, 2015)

Detection of elevated regions in surface images from laser beam melting processes. - Joschka zur Jacobsmühlen; Stefan Kleszczynski; Gerd Witt; Dorit Merhof (IECON, 2015)

Discrimination of cell cycle phases in PCNA-immunolabeled cells. - Felix Schönenberger; Anja Deutzmann; Elisa Ferrando-May; Dorit Merhof (BMC Bioinform., 2015)

Blind weave detection for woven fabrics. - Dorian Schneider; Dorit Merhof (Pattern Anal. Appl., 2015)

Interactive tracking of insect posture. - Minmin Shen; Chen Li 022; Wei Huang 013; Paul Szyszka; Kimiaki Shirahama; Marcin Grzegorzek; Dorit Merhof; Oliver Deussen (Pattern Recognit., 2015)

Vision-Based On-Loom Measurement of Yarn Densities in Woven Fabrics. - Dorian Schneider; Yves-Simon Gloy; Dorit Merhof (IEEE Trans. Instrum. Meas., 2015)

Exploring Crossing Fibers of the Brain's White Matter Using Directional Regions of Interest. - Andreas Graumann; Mirco Richter; Christopher Nimsky; Dorit Merhof (Visualization in Medicine and Life Sciences III, 2016)

Detection and Quantification of Cytoskeletal Granules. - Dennis Eschweiler; Jakob Unger; Kraisorn Chaisaowong; Mugdha Sawant; Reinhard Windoffer; Rudolf E. Leube; Dorit Merhof (Bildverarbeitung für die Medizin, 2016)

Biometrische Messung der Pupillenreaktion. - Christian Hintze; Johannes Junggeburth; Bernhard Hill; Dorit Merhof (Bildverarbeitung für die Medizin, 2016)

Feature Selection Framework for White Matter Fiber Clustering Based on Normalized Cuts. - Simon Koppers; Christoph Hebisch; Dorit Merhof (Bildverarbeitung für die Medizin, 2016)

Automated enhancement and detection of stripe defects in large circular weft knitted fabrics. - Marcin Kopaczka; Hanry Ham; Kristina Simonis; Raphael Kolk; Dorit Merhof (ETFA, 2016)

Flattening of the Lung Surface with Temporal Consistency for the Follow-Up Assessment of Pleural Mesothelioma. - Peter Faltin; Thomas Kraus; Marcin Kopaczka; Dorit Merhof (VISIGRAPP (2: IVAPP), 2016)

Rectification for fronto-parallel camera movement in 3D reconstruction of printed circuit boards. - Matthias Breier; Patrick Küsters; Anna König; Wei Li 052; Marcel Bosling; Thomas Pretz; Dorit Merhof (I2MTC, 2016)

Domain Adaptive Classification for Compensating Variability in Histopathological Whole Slide Images. - Michael Gadermayr; Martin Strauch; Barbara Mara Klinkhammer; Sonja Djudjaj; Peter Boor; Dorit Merhof (ICIAR, 2016)

Have we underestimated the power of image undistortion? - Wei Li 052; Wenting Huang; Matthias Breier; Dorit Merhof (ICIP, 2016)

Robust calibration marker detection in powder bed images from laser beam melting processes. - Joschka zur Jacobsmühlen; Jan Achterhold; Stefan Kleszczynski; Gerd Witt; Dorit Merhof (ICIT, 2016)

Localizing components on printed circuit boards using 2D information. - Wei Li 052; Chen Jiang 006; Matthias Breier; Dorit Merhof (ICIT, 2016)

Color filter arrays revisited - Evaluation of Bayer pattern interpolation for industrial applications. - Matthias Breier; Constantin Haas; Wei Li 052; Dorit Merhof (INDIN, 2016)

Incorporating human knowledge in automated celiac disease diagnosis. - Michael Gadermayr; Hubert Kogler; Maximilian Karla; Andreas Vécsei; Andreas Uhl; Dorit Merhof (IPTA, 2016)

An automated method for realistic face simulation and facial landmark annotation and its application to active appearance models. - Marcin Kopaczka; Carlo Hensel; Dorit Merhof (IPTA, 2016)

Multi-class single-label classification of histopathological whole-slide images. - Daniel Bug; Julia Schüler; Friedrich Feuerhake; Dorit Merhof (ISBI, 2016)

Smoothness-constrained convex cone analysis for signal extraction from calcium imaging movies. - Martin Strauch; Markus Rothermel; Matt Wachowiak; Dorit Merhof (ISBI, 2016)

Automated anatomical description of pleural thickening towards improvement of its computer-assisted diagnosis. - Kraisorn Chaisaowong; Mingze Jiang; Peter Faltin; Dorit Merhof; Christian Eisenhawer; Monika Gube; Thomas Kraus (Computer-Aided Diagnosis, 2016)

Do We Need Large Annotated Training Data for Detection Applications in Biomedical Imaging? A Case Study in Renal Glomeruli Detection. - Michael Gadermayr; Barbara Mara Klinkhammer; Peter Boor; Dorit Merhof (MLMI@MICCAI, 2016)

Direct Estimation of Fiber Orientations Using Deep Learning in Diffusion Imaging. - Simon Koppers; Dorit Merhof (MLMI@MICCAI, 2016)

Evaluation of i-Scan Virtual Chromoendoscopy and Traditional Chromoendoscopy for the Automated Diagnosis of Colonic Polyps. - Georg Wimmer; Michael Gadermayr; Roland Kwitt; Michael Häfner; Dorit Merhof; Andreas Uhl (CARE@MICCAI, 2016)

A Feasibility Study on Automated Protein Aggregate Characterization Utilizing a Hybrid Classification Model. - Dennis Eschweiler; Michael Gadermayr; Jakob Unger; Markus Nippold; Björn Falkenburger; Dorit Merhof (VCBM/MedViz, 2016)

Robust Facial Landmark Detection and Face Tracking in Thermal Infrared Images using Active Appearance Models. - Marcin Kopaczka; Kemal Acar; Dorit Merhof (VISIGRAPP (4: VISAPP), 2016)

Recycle deep features for better object detection. - Wei Li 052; Matthias Breier; Dorit Merhof (CoRR, 2016)

Face Detection in Thermal Infrared Images: A Comparison of Algorithm- and Machine-Learning-Based Approaches. - Marcin Kopaczka; Jan Nestler; Dorit Merhof (ACIVS, 2017)

Analyzing Immunohistochemically Stained Whole-Slide Images of Ovarian Carcinoma. - Daniel Bug; Anne Grote; Julia Schüler; Friedrich Feuerhake; Dorit Merhof (Bildverarbeitung für die Medizin, 2017)

Reliable Estimation of the Number of Compartments in Diffusion MRI. - Simon Koppers; Christoph Haarburger; J. Christopher Edgar; Dorit Merhof (Bildverarbeitung für die Medizin, 2017)

Evaluation of Multi-Channel Image Registration in Microscopy. - Sascha E. A. Muenzing; Andreas S. Thum; Katja Bühler; Dorit Merhof (Bildverarbeitung für die Medizin, 2017)

A Quantitative Assessment of Image Normalization for Classifying Histopathological Tissue of the Kidney. - Michael Gadermayr; Sean Steven Cooper; Barbara Mara Klinkhammer; Peter Boor; Dorit Merhof (GCPR, 2017)

Compound quality assessment in laser beam melting processes using layer images. - Joschka zur Jacobsmühlen; Stefan Kleszczynski; Gerd Witt; Dorit Merhof (I2MTC, 2017)

The Importance of Smoothness Constraints on Spectral Object Reflectances when Modeling Metamer Mismatching. - Tarek Stiebel; Dorit Merhof (ICCV Workshops, 2017)

Fully-Automated CNN-Based Computer Aided Celiac Disease Diagnosis. - Michael Gadermayr; Georg Wimmer; Andreas Uhl; Hubert Kogler; Andreas Vécsei; Dorit Merhof (ICIAP (2), 2017)

Face Tracking and Respiratory Signal Analysis for the Detection of Sleep Apnea in Thermal Infrared Videos with Head Movement. - Marcin Kopaczka; Özcan Özkan; Dorit Merhof (ICIAP Workshops, 2017)

Unsupervised data analysis for virus detection with a surface plasmon resonance sensor. - Dominic Siedhoff; Martin Strauch; Victoria Shpacovitch; Dorit Merhof (IPTA, 2017)

Context-Based Normalization of Histological Stains Using Deep Convolutional Features. - Daniel Bug; Steffen Schneider 001; Anne Grote; Eva Oswald; Friedrich Feuerhake; Julia Schüler; Dorit Merhof (DLMIA/ML-CDS@MICCAI, 2017)

An unsupervised learning approach for tracking mice in an enclosed area. - Jakob Unger; Mike Mansour; Marcin Kopaczka; Nina Gronloh; Marc Spehr; Dorit Merhof (BMC Bioinform., 2017)

Segmenting renal whole slide images virtually without training data. - Michael Gadermayr; Dennis Eschweiler; Abiramjee Jeevanesan; Barbara Mara Klinkhammer; Peter Boor; Dorit Merhof (Comput. Biol. Medicine, 2017)

CNN Cascades for Segmenting Whole Slide Images of the Kidney. - Michael Gadermayr; Ann-Kathrin Dombrowski; Barbara Mara Klinkhammer; Peter Boor; Dorit Merhof (CoRR, 2017)

Recovering a Chemotopic Feature Space from a Group of Fruit Fly Antenna Chemosensors. - Martin Strauch; Latha Mukunda; Alja Lüdke; C. Giovanni Galizia; Dorit Merhof (BIBE, 2018)

Transfer Learning for Breast Cancer Malignancy Classification based on Dynamic Contrast-Enhanced MR Images. - Christoph Haarburger; Peter Langenberg; Daniel Truhn; Hannah Schneider; Johannes Thüring; Simone Schrading; Christiane K. Kuhl; Dorit Merhof (Bildverarbeitung für die Medizin, 2018)

Towards Analysis of Mental Stress Using Thermal Infrared Tomography. - Marcin Kopaczka; Thomas Jantos; Dorit Merhof (Bildverarbeitung für die Medizin, 2018)

Reconstructing Spectral Images From RGB-Images Using a Convolutional Neural Network. - Tarek Stiebel; Simon Koppers; Philipp Seltsam; Dorit Merhof (CVPR Workshops, 2018)

An Inspection System for Multi-Label Polymer Classification. - Tarek Stiebel; Marcel Bosling; Aljoscha Steffens; Thomas Pretz; Dorit Merhof (ETFA, 2018)

Correction of Thread Position Mismatch in High Precision CNC Sewing. - Tarek Stiebel; Dieter Geller; Dorit Merhof (ETFA, 2018)

A fully annotated thermal face database and its application for thermal facial expression recognition. - Marcin Kopaczka; Raphael Kolk; Dorit Merhof (I2MTC, 2018)

Defect detection in plain weave fabrics by yarn tracking and fully convolutional networks. - Leon Weninger; Marcin Kopaczka; Dorit Merhof (I2MTC, 2018)

Robust Statistics for Feature-based Active Appearance Models. - Marcin Kopaczka; Philipp Gräbel; Dorit Merhof (ICETE (1), 2018)

Gradual Domain Adaptation for Segmenting Whole Slide Images Showing Pathological Variability. - Michael Gadermayr; Dennis Eschweiler; Barbara Mara Klinkhammer; Peter Boor; Dorit Merhof (ICISP, 2018)

Fully Automatic Faulty Weft Thread Detection using a Camera System and Feature-based Pattern Recognition. - Marcin Kopaczka; Marco Saggiomo; Moritz Güttler; Thomas Gries; Dorit Merhof (ICPRAM, 2018)

Detection and Classification of Faulty Weft Threads Using Both Feature-Based and Deep Convolutional Machine Learning Methods. - Marcin Kopaczka; Marco Saggiomo; Moritz Güttler; Kevin Kielholz; Dorit Merhof (ICPRAM (Revised Selected Papers), 2018)

A Robust Algorithm for Computing Boundary Points of the Metamer Mismatch Body. - Tarek Stiebel; Dorit Merhof (CIC, 2018)

Stain independent segmentation of whole slide images: A case study in renal histology. - Laxmi Gupta; Barbara Mara Klinkhammer; Peter Boor; Dorit Merhof; Michael Gadermayr (ISBI, 2018)

Abbreviated breast biopsy procedure by registration of craniocaudal and mediolateral breast MR images. - Christoph Haarburger; Johannes Ruther; Daniel Truhn; Simone Schrading; Daniel Bug; Christiane K. Kuhl; Dorit Merhof (ISBI, 2018)

A combined modular system for face detection, head pose estimation, face tracking and emotion recognition in thermal infrared images. - Marcin Kopaczka; Justus Schock; Jan Nestler; Kevin Kielholz; Dorit Merhof (IST, 2018)

MixNet: Multi-modality Mix Network for Brain Segmentation. - Long Chen 014; Dorit Merhof (BrainLes@MICCAI (1), 2018)

Which Way Round? A Study on the Performance of Stain-Translation for Segmenting Arbitrarily Dyed Histological Images. - Michael Gadermayr; Vitus Appel; Barbara Mara Klinkhammer; Peter Boor; Dorit Merhof (MICCAI (2), 2018)

Evaluating Out-of-the-Box Methods for the Classification of Hematopoietic Cells in Images of Stained Bone Marrow. - Philipp Gräbel; Martina Crysandt; Reinhild Herwartz; Melanie Hoffmann; Barbara Mara Klinkhammer; Peter Boor; Tim H. Brümmendorf; Dorit Merhof (COMPAY/OMIA@MICCAI, 2018)

Segmentation of Brain Tumors and Patient Survival Prediction: Methods for the BraTS 2018 Challenge. - Leon Weninger; Oliver Rippel; Simon Koppers; Dorit Merhof (BrainLes@MICCAI (2), 2018)

Introducing CNN-Based Mouse Grim Scale Analysis for Fully Automated Image-Based Assessment of Distress in Laboratory Mice. - Marcin Kopaczka; Lisa Ernst; Justus Schock; Arne Schneuing; Alexander Guth; René Tolba; Dorit Merhof (VCBM@MICCAI, 2018)

Annotated Dendrograms for Neurons From the Larval Fruit Fly Brain. - Martin Strauch; Volker Hartenstein; Ingrid V. Andrade; Albert Cardona; Dorit Merhof (VCBM@MICCAI, 2018)

Automated classification of celiac disease during upper endoscopy: Status quo and quo vadis. - Michael Gadermayr; Georg Wimmer; Hubert Kogler; Andreas Vécsei; Dorit Merhof; Andreas Uhl (Comput. Biol. Medicine, 2018)

Training of polyp staging systems using mixed imaging modalities. - Georg Wimmer; Michael Gadermayr; Roland Kwitt; Michael Häfner; Toru Tamaki; Shigeto Yoshida; Shinji Tanaka; Dorit Merhof; Andreas Uhl (Comput. Biol. Medicine, 2018)

DELIMIT PyTorch - An extension for Deep Learning in Diffusion Imaging. - Simon Koppers; Dorit Merhof (CoRR, 2018)

Spherical Harmonic Residual Network for Diffusion Signal Harmonization. - Simon Koppers; Luke Bloy; Jeffrey I. Berman; Chantal M. W. Tax; J. Christopher Edgar; Dorit Merhof (CoRR, 2018)

Image-based Survival Analysis for Lung Cancer Patients using CNNs. - Christoph Haarburger; Philippe Weitz; Oliver Rippel; Dorit Merhof (CoRR, 2018)

larvalign: Aligning Gene Expression Patterns from the Larval Brain of Drosophila melanogaster. - Sascha E. A. Muenzing; Martin Strauch; James W. Truman; Katja Bühler; Andreas S. Thum; Dorit Merhof (Neuroinformatics, 2018)

Interpolating Maps between Neural Response Spaces for Chemosensing with Fruit Fly Antenna Sensors. - Martin Strauch; Karl Krüger; Latha Mukunda; Alja Lüdke; C. Giovanni Galizia; Dorit Merhof (BIBE, 2019)

Deep Multi-Modal Encoder-Decoder Networks for Shape Constrained Segmentation and Joint Representation Learning. - Nassim Bouteldja; Dorit Merhof; Jan Ehrhardt; Mattias P. Heinrich (Bildverarbeitung für die Medizin, 2019)

Sodium Image Denoising Based on a Convolutional Denoising Autoencoder. - Simon Koppers; Edouard Coussoux; Sandro Romanzetti; Kathrin Reetz; Dorit Merhof (Bildverarbeitung für die Medizin, 2019)

Prediction of Liver Function Based on DCE-CT. - Oliver Rippel; Daniel Truhn; Johannes Thüring; Christoph Haarburger; Christiane K. Kuhl; Dorit Merhof (Bildverarbeitung für die Medizin, 2019)

Multi-task Learning for Brain Tumor Segmentation. - Leon Weninger; Qianyu Liu; Dorit Merhof (BrainLes@MICCAI (1), 2019)

Instance Segmentation of Nematode Cysts in Microscopic Images of Soil Samples. - Long Chen 014; Martin Strauch; Matthias Daub; Marcus Jansen; Hans-Georg Luigs; Dorit Merhof (EMBC, 2019)

Assessment of Laboratory Mouse Activity in Video Recordings Using Deep Learning Methods. - Marcin Kopaczka; Daniel Tillmann; Lisa Ernst; Justus Schock; René Tolba; Dorit Merhof (EMBC, 2019)

Image-Based Survival Prediction for Lung Cancer Patients Using CNNS. - Christoph Haarburger; Philippe Weitz; Oliver Rippel; Dorit Merhof (ISBI, 2019)

Instance Segmentation of Biomedical Images with an Object-Aware Embedding Learned with Local Constraints. - Long Chen 014; Martin Strauch; Dorit Merhof (MICCAI (1), 2019)

Combined Learning for Similar Tasks with Domain-Switching Networks. - Daniel Bug; Dennis Eschweiler; Qianyu Liu; Justus Schock; Leon Weninger; Friedrich Feuerhake; Julia Schüler; Johannes Stegmaier; Dorit Merhof (MICCAI (5), 2019)

GAN-Based Image Enrichment in Digital Pathology Boosts Segmentation Accuracy. - Laxmi Gupta; Barbara Mara Klinkhammer; Peter Boor; Dorit Merhof; Michael Gadermayr (MICCAI (1), 2019)

Multi Scale Curriculum CNN for Context-Aware Breast MRI Malignancy Classification. - Christoph Haarburger; Michael Baumgartner 001; Daniel Truhn; Mirjam Broeckmann; Hannah Schneider; Simone Schrading; Christiane Kuhl; Dorit Merhof (MICCAI (4), 2019)

Unsupervisedly Training GANs for Segmenting Digital Pathology with Automatically Generated Annotations. - Michael Gadermayr; Laxmi Gupta; Barbara Mara Klinkhammer; Peter Boor; Dorit Merhof (MIDL, 2019)

Iterative learning to make the most of unlabeled and quickly obtained labeled data in histology. - Laxmi Gupta; Barbara Mara Klinkhammer; Peter Boor; Dorit Merhof; Michael Gadermayr (MIDL, 2019)

Multiparametric Magnetic Resonance Image Synthesis using Generative Adversarial Networks. - Christoph Haarburger; Nicolas Horst; Daniel Truhn; Mirjam Broeckmann; Simone Schrading; Christiane Kuhl; Dorit Merhof (VCBM, 2019)

Semantic Segmentation of Brain Tumors in MRI Data Without any Labels. - Leon Weninger; Imke Krauhausen; Dorit Merhof (VCBM, 2019)

CNN cascades for segmenting sparse objects in gigapixel whole slide images. - Michael Gadermayr; Ann-Kathrin Dombrowski; Barbara Mara Klinkhammer; Peter Boor; Dorit Merhof (Comput. Medical Imaging Graph., 2019)

Super-realtime facial landmark detection and shape fitting by deep regression of shape model parameters. - Marcin Kopaczka; Justus Schock; Dorit Merhof (CoRR, 2019)

Radiomic Feature Stability Analysis based on Probabilistic Segmentations. - Christoph Haarburger; Justus Schock; Daniel Truhn; Philippe Weitz; Leon Weninger; Dorit Merhof (CoRR, 2019)

Robustness of Radiomics for Survival Prediction of Brain Tumor Patients Depending on Resection Status. - Leon Weninger; Christoph Haarburger; Dorit Merhof (Frontiers Comput. Neurosci., 2019)

Delira: A High-Level Framework for Deep Learning in Medical Image Analysis. - Christoph Haarburger; Justus Schock; Michael Baumgartner 001; Oliver Rippel; Dorit Merhof (J. Open Source Softw., 2019)

Cross-scanner and cross-protocol diffusion MRI data harmonisation: A benchmark database and evaluation of algorithms. - Chantal M. W. Tax; Francesco Grussu; Enrico Kaden; Lipeng Ning; S. Umesh Rudrapatna; C. John Evans; Samuel St-Jean; Alexander Leemans; Simon Koppers; Dorit Merhof; Aurobrata Ghosh; Ryutaro Tanno; et al. (NeuroImage, 2019)

A Modular System for Detection, Tracking and Analysis of Human Faces in Thermal Infrared Recordings. - Marcin Kopaczka; Lukas Breuer; Justus Schock; Dorit Merhof (Sensors, 2019)

A Thermal Infrared Face Database With Facial Landmarks and Emotion Labels. - Marcin Kopaczka; Raphael Kolk; Justus Schock; Felix Burkhard; Dorit Merhof (IEEE Trans. Instrum. Meas., 2019)

Generative Adversarial Networks for Facilitating Stain-Independent Supervised and Unsupervised Segmentation: A Study on Kidney Histology. - Michael Gadermayr; Laxmi Gupta; Vitus Appel; Peter Boor; Barbara Mara Klinkhammer; Dorit Merhof (IEEE Trans. Medical Imaging, 2019)

Scalable HEVC for Histological Whole-Slide Image Compression. - Daniel Bug; Felix Bartsch; Nadine Sarah Schaadt; Mathias Wien; Friedrich Feuerhake; Julia Schüler; Eva Oswald; Dorit Merhof (Bildverarbeitung für die Medizin, 2020)

Image Quilting for Histological Image Synthesis. - Daniel Bug; Gregor Nickel; Anne Grote; Friedrich Feuerhake; Eva Oswald; Julia Schüler; Dorit Merhof (Bildverarbeitung für die Medizin, 2020)

Robust Open Field Rodent Tracking Using a Fully Convolutional Network and a Softargmax Distance Loss. - Marcin Kopaczka; Tobias Jacob; Lisa Ernst; Mareike Schulz; René Tolba; Dorit Merhof (Bildverarbeitung für die Medizin, 2020)

Fully Automated Segmentation of the Psoas Major Muscle in Clinical CT Scans. - Marcin Kopaczka; Richard Lindenpütz; Daniel Truhn; Maximilian Schulze-Hagen; Dorit Merhof (Bildverarbeitung für die Medizin, 2020)

NTIRE 2020 Challenge on Spectral Reconstruction from an RGB Image. - Boaz Arad; Radu Timofte; Ohad Ben-Shahar; Yi-Tun Lin; Graham D. Finlayson; Shai Givati; Jiaojiao Li 001; Chaoxiong Wu; Rui Song 003; Yunsong Li 001; Fei Liu; Zhiqiang Lang; et al. (CVPR Workshops, 2020)

Improving Pixel Embedding Learning Through Intermediate Distance Regression Supervision for Instance Segmentation. - Yuli Wu 001; Long Chen 014; Dorit Merhof (ECCV Workshops (6), 2020)

Accurate Stitch Position Identification of Sewn Threads in Textiles. - Dieter Geller; Tarek Stiebel; Oliver Rippel; Jonas Osburg; Volker Lutz; Thomas Gries; Dorit Merhof (ETFA, 2020)

GAN-based Defect Synthesis for Anomaly Detection in Fabrics. - Oliver Rippel; Maximilian Müller; Dorit Merhof (ETFA, 2020)

Automated Segmentation of Profiled Fibers in cross-sectional Micrographs for Quality Control. - Oliver Rippel; Maximilian Schnabel; Georg-Philipp Paar; Thomas Gries; Dorit Merhof (I2MTC, 2020)

Modeling the Distribution of Normal Data in Pre-Trained Deep Features for Anomaly Detection. - Oliver Rippel; Patrick Mertens; Dorit Merhof (ICPR, 2020)

Linear Spectral Estimate Refinement for Spectral Reconstruction from RGB. - Tarek Stiebel; Dorit Merhof (CIC, 2020)

Efficient Deep Face Alignment with Explicit Statistical Shape Models in Convolutional Neural Networks. - Marcin Kopaczka; Justus Schock; Paul Kruse; Dorit Merhof (IPTA, 2020)

A CNN Framework Based on Line Annotations for Detecting Nematodes in Microscopic Images. - Long Chen 014; Martin Strauch; Matthias Daub; Xiaochen Jiang; Marcus Jansen; Hans-Georg Luigs; Susanne Schultz-Kuhlmann; Stefan Krüssel; Dorit Merhof (ISBI, 2020)

Systematic Analysis And Automated Search Of Hyper-Parameters For Cell Classifier Training. - Philipp Gräbel; Gregor Nickel; Martina Crysandt; Reinhild Herwartz; Melanie Baumann; Barbara Mara Klinkhammer; Peter Boor; Tim H. Brümmendorf; Dorit Merhof (ISBI Workshops, 2020)

Circular Anchors for the Detection of Hematopoietic Cells Using Retinanet. - Philipp Gräbel; Özcan Özkan; Martina Crysandt; Reinhild Herwartz; Melanie Baumann; Barbara Mara Klinkhammer; Peter Boor; Tim H. Brümmendorf; Dorit Merhof (ISBI, 2020)

Radiomic Feature Stability Analysis Based on Probabilistic Segmentations. - Christoph Haarburger; Justus Schock; Daniel Truhn; Philippe Weitz; Gustav Mueller-Franzes; Leon Weninger; Dorit Merhof (ISBI, 2020)

Deep Optimal Filter Responses for Multi-Spectral Imaging. - Tarek Stiebel; Dorit Merhof (LIM, 2020)

Semi-supervised Instance Segmentation with a Learned Shape Prior. - Long Chen 014; Weiwen Zhang; Yuli Wu 001; Martin Strauch; Dorit Merhof (iMIMIC/MIL3ID/LABELS@MICCAI, 2020)

A Method for Semantic Knee Bone and Cartilage Segmentation with Deep 3D Shape Fitting Using Data from the Osteoarthritis Initiative. - Justus Schock; Marcin Kopaczka; Benjamin Agthe; Jie Huang; Paul Kruse; Daniel Truhn; Stefan Conrad 001; Gerald Antoch; Christiane Kuhl; Sven Nebelung; Dorit Merhof (ShapeMI@MICCAI, 2020)

Enhancing Deep Spectral Super-resolution from RGB Images by Enforcing the Metameric Constraint. - Tarek Stiebel; Philipp Seltsam; Dorit Merhof (VISIGRAPP (4: VISAPP), 2020)

A CNN Framenwork Based on Line Annotations for Detecting Nematodes in Microscopic Images. - Long Chen 014; Martin Strauch; Matthias Daub; Xiaochen Jiang; Marcus Jansen; Hans-Georg Luigs; Susanne Schultz-Kuhlmann; Stefan Krüssel; Dorit Merhof (CoRR, 2020)

An Asymetric Cycle-Consistency Loss for Dealing with Many-to-One Mappings in Image Translation: A Study on Thigh MR Scans. - Michael Gadermayr; Maximilian Ernst Tschuchnig; Dorit Merhof; Nils Krämer; Daniel Truhn; Burkhard Gess (CoRR, 2020)

AutoML Segmentation for 3D Medical Image Data: Contribution to the MSD Challenge 2018. - Oliver Rippel; Leon Weninger; Dorit Merhof (CoRR, 2020)

Brightness Invariant Deep Spectral Super-Resolution. - Tarek Stiebel; Dorit Merhof (Sensors, 2020)

Reduction of Stain Variability in Bone Marrow Microscopy Images - Influence of Augmentation and Normalization Methods on Detection and Classification of Hematopoietic Cells. - Philipp Gräbel; Martina Crysandt; Reinhild Herwartz; Melanie Baumann; Barbara Mara Klinkhammer; Peter Boor; Tim H. Brümmendorf; Dorit Merhof (Bildverarbeitung für die Medizin, 2021)

Rotation Invariance for Unsupervised Cell Representation Learning - Analysis of The Impact of Enforcing Rotation Invariance or Equivariance on Representation for Cell Classification. - Philipp Gräbel; Ina Laube; Martina Crysandt; Reinhild Herwartz; Melanie Baumann; Barbara Mara Klinkhammer; Peter Boor; Tim H. Brümmendorf; Dorit Merhof (Bildverarbeitung für die Medizin, 2021)

Autoencoder-based Quality Assessment for Synthetic Diffusion-MRI Data. - Leon Weninger; Maxim Drobjazko; Chuh-Hyoun Na; Kerstin Jütten; Dorit Merhof (Bildverarbeitung für die Medizin, 2021)

Improving Localization of Brain Tumors through 3D GAN Inpainting. - Leon Weninger; Andre Gilerson; Dorit Merhof (EMBC, 2021)

Anomaly Detection for the Automated Visual Inspection of PET Preform Closures. - Oliver Rippel; Peter Haumering; Johannes Brauers; Dorit Merhof (ETFA, 2021)

Leveraging pre-trained Segmentation Networks for Anomaly Segmentation. - Oliver Rippel; Dorit Merhof (ETFA, 2021)

Identifying Pristine and Processed Animal Fibers using Machine Learning. - Oliver Rippel; Niclas Bilitewski; Khosrow Rahimi; Juliana Kurniadi; Andreas Herrmann; Dorit Merhof (I2MTC, 2021)

Deep Frequency Re-calibration U-Net for Medical Image Segmentation. - Reza Azad; Afshin Bozorgpour; Maryam Asadi-Aghbolaghi; Dorit Merhof; Sergio Escalera (ICCVW, 2021)

Guided Representation Learning for the Classification of Hematopoietic Cells. - Philipp Gräbel; Martina Crysandt; Barbara Mara Klinkhammer; Peter Boor; Tim H. Brümmendorf; Dorit Merhof (ICCVW, 2021)

Estimating the Probability Density Function of New Fabrics for Fabric Anomaly Detection. - Oliver Rippel; Maximilian Müller; Andreas Münkel; Thomas Gries; Dorit Merhof (ICPRAM, 2021)

An Asymmetric Cycle-Consistency Loss For Dealing With Many-To-One Mappings In Image Translation: A Study On Thigh Mr Scans. - Michael Gadermayr; Maximilian Ernst Tschuchnig; Laxmi Gupta; Nils Krämer; Daniel Truhn; Dorit Merhof; Burkhard Gess (ISBI, 2021)

Surrounding Cell Suppression For Unsupervised Representation Learning In Hematological Cell Classification. - Philipp Gräbel; Ina Laube; Martina Crysandt; Reinhild Herwartz; Melanie Baumann; Barbara Mara Klinkhammer; Peter Boor; Tim H. Brümmendorf; Dorit Merhof (ISBI, 2021)

The Medical Segmentation Decathlon. - Michela Antonelli; Annika Reinke; Spyridon Bakas; Keyvan Farahani; Annette Kopp-Schneider; Bennett A. Landman; Geert Litjens 001; Bjoern H. Menze; Olaf Ronneberger; Ronald M. Summers; Bram van Ginneken; Michel Bilello; et al. (CoRR, 2021)

High-throughput Phenotyping of Nematode Cysts. - Long Chen 014; Matthias Daub; Hans-Georg Luigs; Marcus Jansen; Martin Strauch; Dorit Merhof (CoRR, 2021)

Improving Unsupervised Stain-To-Stain Translation using Self-Supervision and Meta-Learning. - Nassim Bouteldja; Barbara Mara Klinkhammer; Tarek Schlaich; Peter Boor; Dorit Merhof (CoRR, 2021)

Gaussian Anomaly Detection by Modeling the Distribution of Normal Data in Pretrained Deep Features. - Oliver Rippel; Patrick Mertens; Eike König; Dorit Merhof (IEEE Trans. Instrum. Meas., 2021)

Computation of Traveled Distance of Pigs in an Open Field with Fully Convolutional Neural Networks. - Marcin Kopaczka; Lisa Ernst; Mareike Schulz; René Tolba; Dorit Merhof (Bildverarbeitung für die Medizin, 2022)

Diffusion MRI Specific Pretraining by Self-supervision on an Auxiliary Dataset. - Leon Weninger; Jarek Ecke; Chuh-Hyoun Na; Kerstin Jütten; Dorit Merhof (Bildverarbeitung für die Medizin, 2022)

Multiscale Softmax Cross Entropy for Fovea Localization on Color Fundus Photography. - Yuli Wu 001; Peter Walter; Dorit Merhof (Bildverarbeitung für die Medizin, 2022)

Instance Segmentation of Dense and Overlapping Objects via Layering. - Long Chen 014; Yuli Wu 001; Dorit Merhof (BMVC, 2022)

Harmonization of Diffusion MRI Data Obtained with Multiple Head Coils Using Hybrid CNNs. - Leon Weninger; Sandro Romanzetti; Julia Ebert; Kathrin Reetz; Dorit Merhof (ECCV Workshops (7), 2022)

Learning to Segment Fine Structures Under Image-Level Supervision With an Application to Nematode Segmentation*. - Long Chen 014; Martin Strauch; Matthias Daub; Hans-Georg Luigs; Marcus Jansen; Dorit Merhof (EMBC, 2022)

Panoptic Segmentation of Animal Fibers. - Oliver Rippel; Nikolaj Schönfelder; Khosrow Rahimi; Juliana Kurniadi; Andreas Herrmann; Dorit Merhof (I2MTC, 2022)

Automatic Embedding Interventions for the Classification of Hematopoietic Cells. - Philipp Gräbel; Julian Thull; Martina Crysandt; Barbara Mara Klinkhammer; Peter Boor; Tim H. Brümmendorf; Dorit Merhof (ICPR, 2022)

Ordinal Classification and Regression Techniques for Distinguishing Neutrophilic Cell Maturity Stages in Human Bone Marrow. - Philipp Gräbel; Martina Crysandt; Barbara Mara Klinkhammer; Peter Boor; Tim H. Brümmendorf; Dorit Merhof (ICPRAI (2), 2022)

Transfer Learning Gaussian Anomaly Detection by Fine-tuning Representations. - Oliver Rippel; Arnav Chavan; Chucai Lei; Dorit Merhof (IMPROVE, 2022)

Analysis of automatically generated embedding guides for cell classification. - Philipp Gräbel; Julian Thull; Martina Crysandt; Barbara Mara Klinkhammer; Peter Boor; Tim H. Brümmendorf; Dorit Merhof (IPTA, 2022)

Spatial Maturity Regression for the Classification of Hematopoietic Cells. - Philipp Gräbel; Julian Thull; Martina Crysandt; Barbara Mara Klinkhammer; Peter Boor; Tim H. Brümmendorf; Dorit Merhof (IPTA, 2022)

Monoplanar CT Reconstruction with GANs. - Justus Schock; Yu-Chia Lan; Daniel Truhn; Marcin Kopaczka; Stefan Conrad 001; Sven Nebelung; Dorit Merhof (IPTA, 2022)

From Supervised to Unsupervised Harmonization of Diffusion Mri Acquisitions. - Leon Weninger; Mushawar Ahmad; Dorit Merhof (ISBI, 2022)

Intervertebral Disc Labeling with Learning Shape Information, a Look once Approach. - Reza Azad; Moein Heidari; Julien Cohen-Adad; Ehsan Adeli 001; Dorit Merhof (PRIME@MICCAI, 2022)

TransDeepLab: Convolution-Free Transformer-Based DeepLab v3+ for Medical Image Segmentation. - Reza Azad; Moein Heidari; Moein Shariatnia; Ehsan Khodapanah Aghdam; Sanaz Karimijafarbigloo; Ehsan Adeli 001; Dorit Merhof (PRIME@MICCAI, 2022)

Contextual Attention Network: Transformer Meets U-Net. - Reza Azad; Moein Heidari; Yuli Wu 001; Dorit Merhof (MLMI@MICCAI, 2022)

SMU-Net: Style matching U-Net for brain tumor segmentation with missing modalities. - Reza Azad; Nika Khosravi; Dorit Merhof (MIDL, 2022)

Animal Fiber Identification under the Open Set Condition. - Oliver Rippel; Sergen Gülçelik; Khosrow Rahimi; Juliana Kurniadi; Andreas Herrmann; Dorit Merhof (VISIGRAPP (5: VISAPP), 2022)

TransNorm: Transformer Provides a Strong Spatial Normalization Mechanism for a Deep Segmentation Model. - Reza Azad; Mohammad T. Al-Antary; Moein Heidari; Dorit Merhof (IEEE Access, 2022)

Automated major psoas muscle volumetry in computed tomography using machine learning algorithms. - Felix Duong; Michael Gadermayr; Dorit Merhof; Christiane Kuhl; Philipp Bruners; Sven H. Loosen; Christoph Roderburg; Daniel Truhn; Maximilian F. Schulze-Hagen (Int. J. Comput. Assist. Radiol. Surg., 2022)

Medical Image Segmentation on MRI Images with Missing Modalities: A Review. - Reza Azad; Nika Khosravi; Mohammad Dehghanmanshadi; Julien Cohen-Adad; Dorit Merhof (CoRR, 2022)

Diffusion Models for Medical Image Analysis: A Comprehensive Survey. - Amirhossein Kazerouni; Ehsan Khodapanah Aghdam; Moein Heidari; Reza Azad; Mohsen Fayyaz; Ilker Hacihaliloglu; Dorit Merhof (CoRR, 2022)

Increasing the Generalization of Supervised Fabric Anomaly Detection Methods to Unseen Fabrics. - Oliver Rippel; Corinna Zwinge; Dorit Merhof (Sensors, 2022)

A Deep Learning-based in silico Framework for Optimization on Retinal Prosthetic Stimulation. - Yuli Wu 001; Ivan Karetic; Johannes Stegmaier; Peter Walter; Dorit Merhof (EMBC, 2023)

SortedAP: Rethinking evaluation metrics for instance segmentation. - Long Chen 014; Yuli Wu 001; Johannes Stegmaier; Dorit Merhof (ICCV (Workshops), 2023)

Self-supervised Semantic Segmentation: Consistency over Transformation. - Sanaz Karimijafarbigloo; Reza Azad; Amirhossein Kazerouni; Yury Velichko; Ulas Bagci; Dorit Merhof (ICCV (Workshops), 2023)

Implicit Neural Representation in Medical Imaging: A Comparative Survey. - Amirali Molaei; Amirhossein Aminimehr; Armin Tavakoli; Amirhossein Kazerouni; Bobby Azad; Reza Azad; Dorit Merhof (ICCV (Workshops), 2023)

Attention Swin U-Net: Cross-Contextual Attention Mechanism for Skin Lesion Segmentation. - Ehsan Khodapanah Aghdam; Reza Azad; Maral Zarvani; Dorit Merhof (ISBI, 2023)

Using Synthetic Training Data in Neural Networks for the Estimation of Fiber Orientation Distribution Functions from Single Shell Data. - Amelie Rauland; Dorit Merhof (ISBI, 2023)

DAE-Former: Dual Attention-Guided Efficient Transformer for Medical Image Segmentation. - Reza Azad; René Arimond; Ehsan Khodapanah Aghdam; Amirhossein Kazerouni; Dorit Merhof (PRIME@MICCAI, 2023)

Laplacian-Former: Overcoming the Limitations of Vision Transformers in Local Texture Detection. - Reza Azad; Amirhossein Kazerouni; Babak Azad; Ehsan Khodapanah Aghdam; Yury Velichko; Ulas Bagci; Dorit Merhof (MICCAI (3), 2023)

DermoSegDiff: A Boundary-Aware Segmentation Diffusion Model for Skin Lesion Delineation. - Afshin Bozorgpour; Yousef Sadegheih; Amirhossein Kazerouni; Reza Azad; Dorit Merhof (PRIME@MICCAI, 2023)

Self-supervised Few-Shot Learning for Semantic Segmentation: An Annotation-Free Approach. - Sanaz Karimijafarbigloo; Reza Azad; Dorit Merhof (PRIME@MICCAI, 2023)

MS-Former: Multi-Scale Self-Guided Transformer for Medical Image Segmentation. - Sanaz Karimijafarbigloo; Reza Azad; Amirhossein Kazerouni; Dorit Merhof (MIDL, 2023)

MMCFormer: Missing Modality Compensation Transformer for Brain Tumor Segmentation. - Sanaz Karimijafarbigloo; Reza Azad; Amirhossein Kazerouni; Saeed Ebadollahi; Dorit Merhof (MIDL, 2023)

Unlocking Fine-Grained Details with Wavelet-Based High-Frequency Enhancement in Transformers. - Reza Azad; Amirhossein Kazerouni; Alaa Sulaiman; Afshin Bozorgpour; Ehsan Khodapanah Aghdam; Abin Jose; Dorit Merhof (MLMI@MICCAI (1), 2023)

HiFormer: Hierarchical Multi-scale Representations Using Transformers for Medical Image Segmentation. - Moein Heidari; Amirhossein Kazerouni; Milad Soltany Kadarvish; Reza Azad; Ehsan Khodapanah Aghdam; Julien Cohen-Adad; Dorit Merhof (WACV, 2023)

Enhancing Medical Image Segmentation with TransCeption: A Multi-Scale Feature Fusion Approach. - Reza Azad; Yiwei Jia; Ehsan Khodapanah Aghdam; Julien Cohen-Adad; Dorit Merhof (CoRR, 2023)

Foundational Models in Medical Imaging: A Comprehensive Survey and Future Vision. - Bobby Azad; Reza Azad; Sania Eskandari; Afshin Bozorgpour; Amirhossein Kazerouni; Islem Rekik; Dorit Merhof (CoRR, 2023)

Loss Functions in the Era of Semantic Segmentation: A Survey and Outlook. - Reza Azad; Moein Heidari; Kadir Yilmaz; Michael Hüttemann; Sanaz Karimijafarbigloo; Yuli Wu 001; Anke Schmeink; Dorit Merhof (CoRR, 2023)

Continual Learning in Medical Imaging Analysis: A Comprehensive Review of Recent Advancements and Future Prospects. - Pratibha Kumari 001; Joohi Chauhan; Afshin Bozorgpour; Reza Azad; Dorit Merhof (CoRR, 2023)

The Liver Tumor Segmentation Benchmark (LiTS). - Patrick Bilic; Patrick Ferdinand Christ; Hongwei Li 004; Eugene Vorontsov; Avi Ben-Cohen; Georgios Kaissis; Adi Szeskin; Colin Jacobs; Gabriel Efrain Humpire Mamani; Gabriel Chartrand; Fabian Lohöfer; Julian Walter Holch; et al. (Medical Image Anal., 2023)

SegPC-2021: A challenge & dataset on segmentation of Multiple Myeloma plasma cells from microscopic images. - Anubha Gupta; Shiv Gehlot; Shubham Goswami; Sachin Motwani; Ritu Gupta; Álvaro García-Faura; Dejan Stepec; Tomaz Martincic; Reza Azad; Dorit Merhof; Afshin Bozorgpour; Babak Azad; et al. (Medical Image Anal., 2023)

Diffusion models in medical imaging: A comprehensive survey. - Amirhossein Kazerouni; Ehsan Khodapanah Aghdam; Moein Heidari; Reza Azad; Mohsen Fayyaz; Ilker Hacihaliloglu; Dorit Merhof (Medical Image Anal., 2023)

MSA2Net: Multi-scale Adaptive Attention-guided Network for Medical Image Segmentation. - Sina Ghorbani Kolahi; Seyed Kamal Chaharsooghi; Toktam Khatibi; Afshin Bozorgpour; Reza Azad; Moein Heidari; Ilker Hacihaliloglu; Dorit Merhof (BMVC, 2024)

HCA-NET: Hierarchical Context Attention Network for Intervertebral Disc Semantic Labeling. - Afshin Bozorgpour; Bobby Azad; Reza Azad; Yury Velichko; Ulas Bagci; Dorit Merhof (ISBI, 2024)

Utnetpara: A Hybrid CNN-Transformer Architecture with Multi-Scale Fusion for Whole-Slide Image Segmentation. - Boqiang Huang; Jiayu Ying; Ruizhi Lyu; Nadine S. Schaadt; Barbara Mara Klinkhammer; Peter Boor; Johannes Lotz 002; Friedrich Feuerhake; Dorit Merhof (ISBI, 2024)

Leveraging Unlabeled Data for 3D Medical Image Segmentation Through Self-Supervised Contrastive Learning. - Sanaz Karimijafarbigloo; Reza Azad; Yury Velichko; Ulas Bagci; Dorit Merhof (ISBI, 2024)

Fusenet: Self-Supervised Dual-Path Network For Medical Image Segmentation. - Amirhossein Kazerouni; Sanaz Karimijafarbigloo; Reza Azad; Yury Velichko; Ulas Bagci; Dorit Merhof (ISBI, 2024)

Self-Supervised Contrastive Learning for Consistent Few-Shot Image Representations. - Sanaz Karimijafarbigloo; Reza Azad; Dorit Merhof (PRIME@MICCAI, 2024)

Continual Domain Incremental Learning for Privacy-Aware Digital Pathology. - Pratibha Kumari 001; Daniel Reisenbüchler; Lucas Luttner; Nadine S. Schaadt; Friedrich Feuerhake; Dorit Merhof (MICCAI (12), 2024)

Unsupervised Latent Stain Adaptation for Computational Pathology. - Daniel Reisenbüchler; Lucas Luttner; Nadine S. Schaadt; Friedrich Feuerhake; Dorit Merhof (MICCAI (11), 2024)

Segmentation of Brain Metastases in MRI: A Two-Stage Deep Learning Approach with Modality Impact Study. - Yousef Sadegheih; Dorit Merhof (PRIME@MICCAI, 2024)

Reducing Uncertainty in 3D Medical Image Segmentation under Limited Annotations through Contrastive Learning. - Sanaz Jarimijafarbigloo; Reza Azad; Amirhossein Kazerouni; Dorit Merhof (MIDL, 2024)

Learning Instance-Discriminative Pixel Embeddings Using Pixel Triplets. - Long Chen 014; Dorit Merhof (MLMI@MICCAI (1), 2024)

Touchstone Benchmark: Are We on the Right Way for Evaluating AI Algorithms for Medical Segmentation? - Pedro R. A. S. Bassi; Wenxuan Li; Yucheng Tang; Fabian Isensee; Zifu Wang; Jieneng Chen; Yu-Cheng Chou; Yannick Kirchhoff; Maximilian Rokuss; Ziyan Huang; Jin Ye 002; Junjun He; et al. (NeurIPS, 2024)

Beyond Self-Attention: Deformable Large Kernel Attention for Medical Image Segmentation. - Reza Azad; Leon Niggemeier; Michael Hüttemann; Amirhossein Kazerouni; Ehsan Khodapanah Aghdam; Yury Velichko; Ulas Bagci; Dorit Merhof (WACV, 2024)

INCODE: Implicit Neural Conditioning with Prior Knowledge Embeddings. - Amirhossein Kazerouni; Reza Azad; Alireza Hosseini; Dorit Merhof; Ulas Bagci (WACV, 2024)

Enhancing Efficiency in Vision Transformer Networks: Design Techniques and Insights. - Moein Heidari; Reza Azad; Sina Ghorbani Kolahi; René Arimond; Leon Niggemeier; Alaa Sulaiman; Afshin Bozorgpour; Ehsan Khodapanah Aghdam; Amirhossein Kazerouni; Ilker Hacihaliloglu; Dorit Merhof (CoRR, 2024)

LHU-Net: A Light Hybrid U-Net for Cost-Efficient, High-Performance Volumetric Medical Image Segmentation. - Yousef Sadegheih; Afshin Bozorgpour; Pratibha Kumari 001; Reza Azad; Dorit Merhof (CoRR, 2024)

Computation-Efficient Era: A Comprehensive Survey of State Space Models in Medical Image Analysis. - Moein Heidari; Sina Ghorbani Kolahi; Sanaz Karimijafarbigloo; Bobby Azad; Afshin Bozorgpour; Soheila Hatami; Reza Azad; Ali Diba; Ulas Bagci; Dorit Merhof; Ilker Hacihaliloglu (CoRR, 2024)

Unsupervised Latent Stain Adaption for Digital Pathology. - Daniel Reisenbüchler; Lucas Luttner; Nadine S. Schaadt; Friedrich Feuerhake; Dorit Merhof (CoRR, 2024)

Physics-Inspired Generative Models in Medical Imaging: A Review. - Dennis Hein; Afshin Bozorgpour; Dorit Merhof; Ge Wang 001 (CoRR, 2024)

Single-Layer Learnable Activation for Implicit Neural Representation (SL2A-INR). - Moein Heidari; Reza Rezaeian; Reza Azad; Dorit Merhof; Hamid Soltanian-Zadeh; Ilker Hacihaliloglu (CoRR, 2024)

Touchstone Benchmark: Are We on the Right Way for Evaluating AI Algorithms for Medical Segmentation? - Pedro R. A. S. Bassi; Wenxuan Li; Yucheng Tang; Fabian Isensee; Zifu Wang; Jieneng Chen; Yu-Cheng Chou; Yannick Kirchhoff; Maximilian Rokuss; Ziyan Huang; Jin Ye 002; Junjun He; et al. (CoRR, 2024)

Advances in medical image analysis with vision Transformers: A comprehensive review. - Reza Azad; Amirhossein Kazerouni; Moein Heidari; Ehsan Khodapanah Aghdam; Amirali Molaei; Yiwei Jia; Abin Jose; Rijo Roy; Dorit Merhof (Medical Image Anal., 2024)

Overcoming data scarcity in biomedical imaging with a foundational multi-task model. - Raphael Schäfer; Till Nicke; Henning Höfener; Annkristin Lange; Dorit Merhof; Friedrich Feuerhake; Volkmar Schulz; Johannes Lotz 002; Fabian Kiessling (Nat. Comput. Sci., 2024)

Medical Image Segmentation Review: The Success of U-Net. - Reza Azad; Ehsan Khodapanah Aghdam; Amelie Rauland; Yiwei Jia; Atlas Haddadi Avval; Afshin Bozorgpour; Sanaz Karimijafarbigloo; Joseph Paul Cohen; Ehsan Adeli 001; Dorit Merhof (IEEE Trans. Pattern Anal. Mach. Intell., 2024)

Preservation of Image Content in Stain-to-stain Translation for Digital Pathology. - Boqiang Huang; Wissem Benjeddou; Nadine S. Schaadt; Johannes Lotz 002; Friedrich Feuerhake; Dorit Merhof (Bildverarbeitung für die Medizin, 2025)

Frequency-Domain Refinement of Vision Transformers for Robust Medical Image Segmentation Under Degradation. - Sanaz Karimijafarbigloo; Sina Ghorbani Kolahi; Reza Azad; Ulas Bagci; Dorit Merhof (WACV, 2025)

Tissue concepts: Supervised foundation models in computational pathology. - Till Nicke; Raphael Schäfer; Henning Höfener; Friedrich Feuerhake; Dorit Merhof; Fabian Kiessling; Johannes Lotz 002 (Comput. Biol. Medicine, 2025)

MedScale-Former: Self-guided multiscale transformer for medical image segmentation. - Sanaz Karimijafarbigloo; Reza Azad; Amirhossein Kazerouni; Dorit Merhof (Medical Image Anal., 2025)

Continual learning in medical image analysis: A comprehensive review of recent advancements and future prospects. - Pratibha Kumari 001; Joohi Chauhan; Afshin Bozorgpour; Boqiang Huang; Reza Azad; Dorit Merhof (Medical Image Anal., 2025)

Echo-E3Net: Efficient Endo-Epi Spatio-Temporal Network for Ejection Fraction Estimation. - Moein Heidari; Afshin Bozorgpour; AmirHossein Zarif-Fakharnia; Dorit Merhof; Ilker Hacihaliloglu (CoRR, 2025)

Domain-incremental White Blood Cell Classification with Privacy-aware Continual Learning. - Pratibha Kumari 001; Afshin Bozorgpour; Daniel Reisenbüchler; Edgar Jost; Martina Crysandt; Christian Matek; Dorit Merhof (CoRR, 2025)

Novel Deep Learning Approaches for Analyzing Diffusion Imaging Data. - Yousef Sadegheih; Leon Weninger; Dorit Merhof (Künstliche Intell., 2025)

Towards Robust and Generalizable Gerchberg Saxton based Physics Inspired Neural Networks for Computer Generated Holography: A Sensitivity Analysis Framework. - Ankit Amrutkar; Björn Kampa; Volkmar Schulz; Johannes Stegmaier; Markus Rothermel; Dorit Merhof (CoRR, 2025)

Attention-based Generative Latent Replay: A Continual Learning Approach for WSI Analysis. - Pratibha Kumari 001; Daniel Reisenbüchler; Afshin Bozorgpour; Nadine S. Schaadt; Friedrich Feuerhake; Dorit Merhof (CoRR, 2025)

CENet: Context Enhancement Network for Medical Image Segmentation. - Afshin Bozorgpour; Sina Ghorbani Kolahi; Reza Azad; Ilker Hacihaliloglu; Dorit Merhof (CoRR, 2025)

Spatial Transcriptomics Expression Prediction from Histopathology Based on Cross-Modal Mask Reconstruction and Contrastive Learning. - Junzhuo Liu 003; Markus Eckstein; Zhixiang Wang; Friedrich Feuerhake; Dorit Merhof (CoRR, 2025)