Reconstruction of genealogical relationships with applications to Phase III of HapMap. - Sofia Kyriazopoulou-Panagiotopoulou; Dorna Kashef Haghighi; Sarah J. Aerni; Andreas Sundquist; Sivan Bercovici; Serafim Batzoglou (Bioinform., 2011)

Inference of Tumor Phylogenies with Improved Somatic Mutation Discovery. - Raheleh Salari; Syed Shayon Saleh; Dorna Kashef Haghighi; David Khavari; Daniel E. Newburger; Robert B. West; Arend Sidow; Serafim Batzoglou (J. Comput. Biol., 2013)

Fast and Scalable Inference of Multi-Sample Cancer Lineages. - Victoria Popic; Raheleh Salari; Iman Hajirasouliha; Dorna Kashef Haghighi; Robert B. West; Serafim Batzoglou (CoRR, 2014)

Read Clouds Uncover Variation in Complex Regions of the Human Genome. - Alex Bishara; Yuling Liu; Dorna Kashef Haghighi; Ziming Weng; Daniel E. Newburger; Robert B. West; Arend Sidow; Serafim Batzoglou (RECOMB, 2015)

Algorithms for decoding cancer genomes : phylogenetic inference and haplotype assembly. - Dorna Kashef Haghighi (2015)

De Novo Mutations in Autism Implicate the Synaptic Elimination Network. - Guhan Ram Venkataraman; Chloe O'Connell; Fumiko Egawa; Dorna Kashef Haghighi; Dennis P. Wall (PSB, 2017)