Genetic algorithm with alternating selection pressure for protein side-chain packing and pK(a) prediction. - Pascal Comte; Sergei Vassiliev; Sheridan K. Houghten; Doug Bruce (Biosyst., 2011)

Modelling the effect of gap junctions on tissue-level cardiac electrophysiology - Doug Bruce; Pras Pathmanathan; Jonathan P. Whiteley (HSB, 2012)

Modeling metal protein complexes from experimental extended X-ray absorption fine structure using evolutionary algorithms. - Collin Price; Sheridan K. Houghten; Sergei Vassiliev; Doug Bruce (CIBCB, 2014)

Discovering oxygen channel topology in photosystem II using implicit ligand sampling and wavefront propagation. - Tatiana Zaraiskaya; Sergei Vassiliev; Doug Bruce (J. Comput. Sci., 2014)