METAREP: JCVI metagenomics reports - an open source tool for high-performance comparative metagenomics. - Johannes Goll; Douglas B. Rusch; David M. Tanenbaum; Mathangi Thiagarajan; Kelvin Li; Barbara A. Methé; Shibu Yooseph (Bioinform., 2010)

Sites Inferred by Metabolic Background Assertion Labeling (SIMBAL): adapting the Partial Phylogenetic Profiling algorithm to scan sequences for signatures that predict protein function. - Jeremy D. Selengut; Douglas B. Rusch; Daniel H. Haft (BMC Bioinform., 2010)