Drug Intervention Response Predictions with Paradigm (DIRPP) Identifies Drug Resistant Cancer Cell Lines and Pathway Mechanisms of Resistance. - Douglas Brubaker; Analisa Difeo; Yanwen Chen; Taylor Pearl; Kaide Zhai; Gürkan Bebek; Mark R. Chance; Jill S. Barnholtz-Sloan (Pacific Symposium on Biocomputing, 2014)

A dynamical systems model of progesterone receptor interactions with inflammation in human parturition. - Douglas Brubaker; Alethea Barbaro; Mark R. Chance; Sam Mesiano (BMC Syst. Biol., 2016)

Frequent Subgraph Mining of Personalized Signaling Pathway Networks Groups Patients with Frequently Dysregulated Disease Pathways and Predicts Prognosis. - Arda Durmaz; Tim A. D. Henderson; Douglas Brubaker; Gürkan Bebek (PSB, 2017)