Constrained De Novo Peptide Identification via Multi-Objective Optimization. - Joël M. Malard; Alejandro Heredia-Langner; Douglas J. Baxter; Kristin H. Jarman; William R. Cannon (IPDPS, 2004)

Peptide identification via constrained multi-objective optimization: Pareto-based genetic algorithms. - Joël M. Malard; Alejandro Heredia-Langner; William R. Cannon; Ryan W. Mooney; Douglas J. Baxter (Concurr. Comput. Pract. Exp., 2005)

Bandwidth challenge - High throughput feature-matching analysis of biological spectral data. - Christopher S. Oehmen; Douglas J. Baxter; Ryan W. Mooney; Shaun O'Leary; Tim Carlson (SC, 2006)

Analytics challenge - High-throughput visual analytics biological sciences: turning data into knowledge. - Christopher S. Oehmen; Lee Ann McCue; Joshua N. Adkins; Katrina M. Waters; Tim Carlson; William R. Cannon; Bobbie-Jo M. Webb-Robertson; Douglas J. Baxter; Elena S. Peterson; Mudita Singhal; Anuj R. Shah; Kyle R. Klicker (SC, 2006)

A High-Performance Hybrid Computing Approach to Massive Contingency Analysis in the Power Grid. - Ian Gorton; Zhenyu Huang 001; Yousu Chen; Benson Kalahar; Shuangshuang Jin; Daniel G. Chavarría-Miranda; Douglas J. Baxter; John Feo (eScience, 2009)

A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data. - Gaurav Ramesh Kulkarni; Ananth Kalyanaraman; William R. Cannon; Douglas J. Baxter (ICPP Workshops, 2009)

Applications in Data-Intensive Computing. - Anuj R. Shah; Joshua N. Adkins; Douglas J. Baxter; William R. Cannon; Daniel G. Chavarría-Miranda; Sutanay Choudhury; Ian Gorton; Deborah K. Gracio; Todd D. Halter; Navdeep Jaitly; John R. Johnson; Richard T. Kouzes; et al. (Adv. Comput., 2010)

MapReduce implementation of a hybrid spectral library-database search method for large-scale peptide identification. - Ananth Kalyanaraman; William R. Cannon; Benjamin Latt; Douglas J. Baxter (Bioinform., 2011)

Proteotyping of Microbial Communities by Optimization of Tandem Mass Spectrometry Data Interpretation. - Alys Hugo; Douglas J. Baxter; William R. Cannon; Ananth Kalyanaraman; Gaurav Ramesh Kulkarni; Stephen J. Callister (Pacific Symposium on Biocomputing, 2012)

ScalaBLAST 2.0: rapid and robust BLAST calculations on multiprocessor systems. - Christopher S. Oehmen; Douglas J. Baxter (Bioinform., 2013)