Molecular Simulations On Supercomputers. - Charles L. Brooks III; William S. Young; Douglas J. Tobias (Int. J. High Perform. Comput. Appl., 1991)

Modeling Protein Homopolymeric Repeats: Possible Polyglutamine Structural Motifs for Huntington's Disease. - Richard H. Lathrop; Malcolm S. Casale; Douglas J. Tobias; J. Lawrence Marsh; Leslie M. Thompson (ISMB, 1998)

Gating energetics of a voltage-dependent K+ channel pore domain. - Greg Starek; J. Alfredo Freites; Simon Bernèche; Douglas J. Tobias (J. Comput. Chem., 2017)

Insights into the solubility of γ D-crystallin from multiscale atomistic simulations. - J. Alfredo Freites; Mohab N. Louis; Douglas J. Tobias (J. Comput. Chem., 2023)