Multiscale computational analysis of Xenopus laevis morphogenesis reveals key insights of systems-level behavior. - Scott H. Robertson; Chris K. Smith; Anna L. Langhans; Sara E. McLinden; Matthew A. Oberhardt; Karoly R. Jakab; Bette Dzamba; Douglas W. DeSimone; Jason A. Papin; Shayn M. Peirce (BMC Syst. Biol., 2007)

Surrogate modeling of Cellular-Potts Agent-Based Models as a segmentation task using the U-Net neural network architecture. - Tien Comlekoglu; Javier Quetzalcóatl Toledo-Marín; Tina Comlekoglu; Douglas W. DeSimone; Shayn M. Peirce; Geoffrey C. Fox; James A. Glazier (CoRR, 2025)

Generative diffusion model surrogates for mechanistic agent-based biological models. - Tien Comlekoglu; Javier Quetzalcóatl Toledo-Marín; Douglas W. DeSimone; Shayn M. Peirce; Geoffrey C. Fox; James A. Glazier (CoRR, 2025)