Stochastic Model of Protease-Ligand Reactions. - Paul E. Anderson 001; Douglas W. Raiford; Deacon J. Sweeney; Travis E. Doom; Michael L. Raymer (BIBE, 2005)

Isolation and Visualization of Codon Usage Biases. - Douglas W. Raiford; Dan E. Krane; Travis E. Doom; Michael L. Raymer (BIBE, 2006)

A Multi-Objective Genetic Algorithm that Employs a Hybrid Approach for Isolating Codon Usage Bias Indicative of Translational Efficiency. - Douglas W. Raiford; Dan E. Krane; Travis E. Doom; Michael L. Raymer (BIBE, 2007)

A Data Mining Approach to Predicting Phylum for Microbial Organisms Using Genome-Wide Sequence Data. - Rao M. Kotamarti; Douglas W. Raiford; Michael L. Raymer; Margaret H. Dunham (BIBE, 2009)

Sequence transformation to a complex signature form for consistent phylogenetic tree using Extensible Markov Model. - Rao M. Kotamarti; Michael Hahsler; Douglas W. Raiford; Margaret H. Dunham (CIBCB, 2010)

Analyzing taxonomic classification using extensible Markov models. - Rao M. Kotamarti; Michael Hahsler; Douglas Raiford; Monnie McGee; Margaret H. Dunham (Bioinform., 2010)

Automated Isolation of Translational Efficiency Bias That Resists the Confounding Effect of GC(AT)-Content. - Douglas W. Raiford; Dan E. Krane; Travis E. Doom; Michael L. Raymer (IEEE ACM Trans. Comput. Biol. Bioinform., 2010)

A Genetic Optimization Approach for Isolating Translational Efficiency Bias. - Douglas W. Raiford; Dan E. Krane; Travis E. Doom; Michael L. Raymer (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Computational prediction and biochemical characterization of novel RNA aptamers to Rift Valley fever virus nucleocapsid protein. - Mary Ellenbecker; Jeremy St. Goddard; Alec Sundet; Jean-Marc Lanchy; Douglas Raiford; J. Stephen Lodmell (Comput. Biol. Chem., 2015)