SparseAssembler: de novo Assembly with the Sparse de Bruijn Graph - Chengxi Ye; Zhanshan (Sam) Ma; Charles H. Cannon; Mihai Pop; Douglas W. Yu (CoRR, 2011)

SparseAssembler2: Sparse k-mer Graph for Memory Efficient Genome Assembly - Chengxi Ye; Charles H. Cannon; Zhanshan (Sam) Ma; Douglas W. Yu; Mihai Pop (CoRR, 2011)

Exploiting sparseness in de novo genome assembly. - Chengxi Ye; Zhanshan (Sam) Ma; Charles H. Cannon; Mihai Pop; Douglas W. Yu (BMC Bioinform., 2012)

Efficient assembly and long-term stability of defensive microbiomes via private resources and community bistability. - Gergely Boza; Sarah F. Worsley; Douglas W. Yu; István Scheuring (PLoS Comput. Biol., 2019)