RNAMST: efficient and flexible approach for identifying RNA structural homologs. - Tzu-Hao Chang; Hsien-Da Huang; Tzu-Neng Chuang; Dray-Ming Shien; Jorng-Tzong Horng (Nucleic Acids Res., 2006)

Incorporating support vector machine for identifying protein tyrosine sulfation sites. - Wen-Chi Chang; Tzong-Yi Lee; Dray-Ming Shien; Justin Bo-Kai Hsu; Jorng-Tzong Horng; Po-Chiang Hsu; Ting-Yuan Wang; Hsien-Da Huang; Rong-Long Pan (J. Comput. Chem., 2009)

Incorporating structural characteristics for identification of protein methylation sites. - Dray-Ming Shien; Tzong-Yi Lee; Wen-Chi Chang; Justin Bo-Kai Hsu; Jorng-Tzong Horng; Po-Chiang Hsu; Ting-Yuan Wang; Hsien-Da Huang (J. Comput. Chem., 2009)

GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group. - Tzong-Yi Lee; Wen-Chi Chang; Justin Bo-Kai Hsu; Tzu-Hao Chang; Dray-Ming Shien (BMC Genom., 2012)