Protein Homology Network Families Reveal Step-Wise Diversification of Type III and Type IV Secretion Systems. - Duccio Medini; Antonello Covacci; Claudio Donati (PLoS Comput. Biol., 2006)

Exploring the Limitations of Peripheral Blood Transcriptional Biomarkers in Predicting Influenza Vaccine Responsiveness. - Luca Marchetti; Emilio Siena; Mario Lauria; Denise Maffione; Nicola Pacchiani; Corrado Priami; Duccio Medini (Complex., 2017)

STRAIN: an R package for multi-locus sequence typing from whole genome sequencing data. - Mattia Dalsass; Margherita Bodini; Christophe G. Lambert; Marie-Cécile Mortier; Marco Romanelli 002; Duccio Medini; Alessandro Muzzi; Alessandro Brozzi (BMC Bioinform., 2019)

CrossCT: CNN and Transformer cross–teaching for multimodal image cell segmentation. - Sara Joubbi; Giorgio Ciano; Dario Cardamone; Giuseppe Maccari; Duccio Medini (Cell Segmentation Challenge @ NeurIPS, 2022)

Pre-trained Models Based on Primary Sequence to Classify Antibody Binding to Protein and Non-protein Targets with 80% Accuracy. - Sara Joubbi; Giuseppe Maccari; Dario Cardamone; Giorgio Ciano; Alessio Micheli; Paolo Milazzo; Duccio Medini (CIBB, 2023)

Deep Learning for Classifying Anti-Shigella Opsono- Phagocytosis-Promoting Monoclonal Antibodies. - Elena Pianfetti; Dario Cardamone; Emanuele Roscioli; Giorgio Ciano; Giuseppe Maccari; Claudia Sala; Francesca Micoli; Rino Rappuoli; Duccio Medini; Elisa Ficarra (MOVI@MICCAI, 2024)

Antibody design using deep learning: from sequence and structure design to affinity maturation. - Sara Joubbi; Alessio Micheli; Paolo Milazzo; Giuseppe Maccari; Giorgio Ciano; Dario Cardamone; Duccio Medini (Briefings Bioinform., 2024)

Improving Antibody-Antigen Interaction Prediction Through Flexibility with ESMFold. - Sara Joubbi; Giuseppe Maccari; Giorgio Ciano; Alessio Micheli; Paolo Milazzo; Duccio Medini (BIOSTEC (1), 2025)