ViQuaS: an improved reconstruction pipeline for viral quasispecies spectra generated by next-generation sequencing. - Duleepa Jayasundara; Isaam Saeed; Suhinthan Maheswararajah; Bill C. Chang; Sen-Lin Tang; Saman K. Halgamuge (Bioinform., 2015)

Accurate reconstruction of viral quasispecies spectra through improved estimation of strain richness. - Duleepa Jayasundara; Isaam Saeed; Bc Chang; Sen-Lin Tang; Saman K. Halgamuge (BMC Bioinform., 2015)

ENVirT: inference of ecological characteristics of viruses from metagenomic data. - Duleepa Jayasundara; Damayanthi Herath; Damith A. Senanayake; Isaam Saeed; Cheng-Yu Yang; Yuan Sun 003; Bill C. Chang; Sen-Lin Tang; Saman K. Halgamuge (BMC Bioinform., 2019)