Subfamily HMMS in Functional Genomics. - Duncan P. Brown; Nandini Krishnamurthy; Joseph M. Dale; Wayne Christopher; Kimmen Sjölander (Pacific Symposium on Biocomputing, 2005)

Functional Classification Using Phylogenomic Inference. - Duncan P. Brown; Kimmen Sjölander (PLoS Comput. Biol., 2006)

Automated Protein Subfamily Identification and Classification. - Duncan P. Brown; Nandini Krishnamurthy; Kimmen Sjölander (PLoS Comput. Biol., 2007)

Efficient functional clustering of protein sequences using the Dirichlet process. - Duncan P. Brown (Bioinform., 2008)

Cloud Scheduler: a resource manager for distributed compute clouds - Patrick Armstrong; Ashok Agarwal; A. Bishop; Andre Charbonneau; Ronald J. Desmarais; K. Fransham; N. Hill; Ian Gable; S. Gaudet; Sharon Goliath; Roger Impey; C. Leavett-Brown; et al. (CoRR, 2010)

Data Intensive High Energy Physics Analysis in a Distributed Cloud - Randall J. Sobie; Ashok Agarwal; M. Anderson; Patrick Armstrong; K. Fransham; Ian Gable; D. Harris; C. Leavett-Brown; Michael Paterson; Duncan Penfold-Brown; M. Vliet; Andre Charbonneau; et al. (CoRR, 2011)

Parametric Bayesian priors and better choice of negative examples improve protein function prediction. - Noah Youngs; Duncan Penfold-Brown; Kevin Drew; Dennis E. Shasha; Richard Bonneau (Bioinform., 2013)

Negative Example Selection for Protein Function Prediction: The NoGO Database. - Noah Youngs; Duncan Penfold-Brown; Richard Bonneau; Dennis E. Shasha (PLoS Comput. Biol., 2014)

Big Data, Social Media, and Protest: Foundations for a Research Agenda. - Joshua A. Tucker; Jonathan Nagler; Megan Macduffee Metzger; Pablo Barberá; Duncan Penfold-Brown; Richard Bonneau (Computational Social Science, 2016)

Text Classification for Automatic Detection of E-Cigarette Use and Use for Smoking Cessation from Twitter: A Feasibility Pilot. - Yin Aphinyanaphongs; Armine Lulejian; Duncan Penfold-Brown; Richard Bonneau; Paul Krebs (PSB, 2016)