Clustering of protein domains for functional and evolutionary studies. - Pavle Goldstein; Jurica Zucko; Dusica Vujaklija; Anita Krisko; Daslav Hranueli; Paul F. Long; Catherine Etchebest; Bojan Basrak; John Cullum (BMC Bioinform., 2009)

An effective approach for annotation of protein families with low sequence similarity and conserved motifs: identifying GDSL hydrolases across the plant kingdom. - Ivan Vujaklija; Ana Bielen; Tina Paradzik; Sinisa Bidin; Pavle Goldstein; Dusica Vujaklija (BMC Bioinform., 2016)

Leitmotif: protein motif scanning 2.0. - Sinisa Bidin; Ivan Vujaklija; Tina Paradzik; Ana Bielen; Dusica Vujaklija (Bioinform., 2020)