Protein structure prediction and analysis using the Robetta server. - David E. Kim; Dylan Chivian; David Baker 001 (Nucleic Acids Res., 2004)

MicrobesOnline: an integrated portal for comparative and functional genomics. - Paramvir S. Dehal; Marcin P. Joachimiak; Morgan N. Price; John T. Bates; Jason K. Baumohl; Dylan Chivian; Greg D. Friedland; Katherine H. Huang; Keith Keller; Pavel S. Novichkov; Inna Dubchak; Eric J. Alm; et al. (Nucleic Acids Res., 2010)

GLAMM: Genome-Linked Application for Metabolic Maps. - John T. Bates; Dylan Chivian; Adam P. Arkin (Nucleic Acids Res., 2011)

metaMicrobesOnline: phylogenomic analysis of microbial communities. - Dylan Chivian; Paramvir S. Dehal; Keith Keller; Adam P. Arkin (Nucleic Acids Res., 2013)