SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing. - Zhifu Sun; Saurabh Baheti; Sumit Middha; Rahul Kanwar; Yuji Zhang 001; Xing Li; Andreas S. Beutler; Eric W. Klee; Yan W. Asmann; E. Aubrey Thompson; Jean-Pierre A. Kocher (Bioinform., 2012)

RVboost: RNA-seq variants prioritization using a boosting method. - Chen Wang 001; Jaime I. Dávila; Saurabh Baheti; Aditya Bhagwate; Xue Wang; Jean-Pierre A. Kocher; Susan L. Slager; Andrew L. Feldman; Anne J. Novak; James R. Cerhan; E. Aubrey Thompson; Yan W. Asmann (Bioinform., 2014)

MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing. - Krishna R. Kalari; Asha A. Nair; Jaysheel D. Bhavsar; Daniel R. O'Brien; Jaime I. Dávila; Matthew A. Bockol; Jinfu J. Nie; Xiaojia Tang; Saurabh Baheti; Jay B. Doughty; Sumit Middha; Hugues Sicotte; et al. (BMC Bioinform., 2014)

Identification of gene regulatory networks associated with breast cancer patient survival using an interpretable deep neural network model. - Xue Wang; Vivekananda Sarangi; Daniel P. Wickland; Shaoyu Li; Duan Chen; E. Aubrey Thompson; Garrett Jenkinson; Yan W. Asmann (Expert Syst. Appl., 2025)

Corrigendum to "Identification of gene regulatory networks associated with breast cancer patient survival using an interpretable deep neural network model" [Expert Syst. Appl. 262 (2025) 125632]. - Xue Wang; Vivekananda Sarangi; Daniel P. Wickland; Shaoyu Li; Duan Chen; E. Aubrey Thompson; Garrett Jenkinson; Yan W. Asmann (Expert Syst. Appl., 2025)