Omega-Stat: An Environment for Implementing Intelligent Modeling Strategies. - E. James Harner; Hanga C. Galfalvy (AISTATS, 1995)

A Formal Approach to Component-Based Software Engineering: Education and Evaluation. - Murali Sitaraman; Timothy J. Long; Bruce W. Weide; E. James Harner; Liqing Wang (ICSE, 2001)

Teaching Component-Based Software Engineering: A Formal Approach and Its Evaluation. - Murali Sitaraman; Timothy J. Long; Bruce W. Weide; E. James Harner; Liqing Wang (Comput. Sci. Educ., 2002)

Haplotype Inference and Block Partitioning in Mixed Population Samples. - Nadezhda Sazonova; E. James Harner (J. Bioinform. Comput. Biol., 2008)

Is Subcellular Localization Informative for Modeling Protein-Protein Interaction Signal? - Junfeng Liu; Hongyu Zhao 003; Jun Tan; Dajie Luo; Weichuan Yu; E. James Harner; Weichung Joe Shih (J. Electr. Comput. Eng., 2008)

JavaStat: a Java/R-based statistical computing environment. - E. James Harner; Dajie Luo; Jun Tan (Comput. Stat., 2009)

Algorithm for haplotype resolution and block partitioning for partial XOR-genotype data. - Nadezhda Sazonova; Edward Sazonov; E. James Harner (J. Biomed. Informatics, 2010)

Random KNN feature selection - a fast and stable alternative to Random Forests. - Shengqiao Li; E. James Harner; Donald A. Adjeroh (BMC Bioinform., 2011)

Random KNN. - Shengqiao Li; E. James Harner; Donald A. Adjeroh (ICDM Workshops, 2014)

IDPM: An Improved Degenerate Pattern Matching Algorithm for Biological Sequences. - Jie Lin; Yue Jiang 001; E. James Harner; Bing-Hua Jiang; Don Adjeroh (Int. J. Found. Comput. Sci., 2017)