Neural ensemble states in prefrontal cortex identified using a hidden Markov model with a modified EM algorithm. - Gregor Rainer; Earl K. Miller (Neurocomputing, 2000)

Visual Categorization: How the Monkey Brain Does It. - Ulf Knoblich; Maximilian Riesenhuber; David J. Freedman; Earl K. Miller; Tomaso A. Poggio (Biologically Motivated Computer Vision, 2002)

The prefrontal cortex: Categories, concepts, and executive control. - Earl K. Miller (IJCNN, 2003)

A Comparison of Abstract Rules in the Prefrontal Cortex, Premotor Cortex, Inferior Temporal Cortex, and Striatum. - Rahmat Muhammad; Jonathan D. Wallis; Earl K. Miller (J. Cogn. Neurosci., 2006)

Neurodynamics of the Prefrontal Cortex during Conditional Visuomotor Associations. - Marco Loh; Anitha Pasupathy; Earl K. Miller; Gustavo Deco (J. Cogn. Neurosci., 2008)

Rapid Association Learning in the Primate Prefrontal Cortex in the Absence of Behavioral Reversals. - Jason A. Cromer; Michelle Machon; Earl K. Miller (J. Cogn. Neurosci., 2011)

Comparison of Primate Prefrontal and Premotor Cortex Neuronal Activity during Visual Categorization. - Jason A. Cromer; Jefferson E. Roy; Timothy J. Buschman; Earl K. Miller (J. Cogn. Neurosci., 2011)

A neural model of sequential movement planning and control of eye movements: Item-Order-Rank working memory and saccade selection by the supplementary eye fields. - Matthew R. Silver; Stephen Grossberg; Daniel Bullock; Mark H. Histed; Earl K. Miller (Neural Networks, 2012)

The importance of mixed selectivity in complex cognitive tasks. - Mattia Rigotti; Omri Barak; Melissa R. Warden; Xiao-Jing Wang; Nathaniel D. Daw; Earl K. Miller; Stefano Fusi (Nat., 2013)

PFC Neurons Reflect Categorical Decisions about Ambiguous Stimuli. - Jefferson E. Roy; Timothy J. Buschman; Earl K. Miller (J. Cogn. Neurosci., 2014)

New Approaches for Studying Cortical Representations. - Dimitris A. Pinotsis; Earl K. Miller (AAAI Spring Symposia, 2017)

On memories, neural ensembles and mental flexibility. - Dimitris A. Pinotsis; Scott L. Brincat; Earl K. Miller (NeuroImage, 2017)

Compressed Timeline of Recent Experience in Monkey Lateral Prefrontal Cortex. - Zoran Tiganj; Jason A. Cromer; Jefferson E. Roy; Earl K. Miller; Marc W. Howard (J. Cogn. Neurosci., 2018)

Sensory processing and categorization in cortical and deep neural networks. - Dimitris A. Pinotsis; Markus Siegel; Earl K. Miller (NeuroImage, 2019)

A Geometric Characterization of Population Coding in the Prefrontal Cortex and Hippocampus during a Paired-Associate Learning Task. - Yue Liu; Scott L. Brincat; Earl K. Miller; Michael E. Hasselmo (J. Cogn. Neurosci., 2020)

Preservation and Changes in Oscillatory Dynamics across the Cortical Hierarchy. - Mikael Lundqvist; André M. Bastos; Earl K. Miller (J. Cogn. Neurosci., 2020)

Task-evoked activity quenches neural correlations and variability across cortical areas. - Takuya Ito; Scott L. Brincat; Markus Siegel; Ravi D. Mill; Biyu J. He; Earl K. Miller; Horacio G. Rotstein; Michael W. Cole (PLoS Comput. Biol., 2020)

Achieving stable dynamics in neural circuits. - Leo Kozachkov; Mikael Lundqvist; Jean-Jacques E. Slotine; Earl K. Miller (PLoS Comput. Biol., 2020)

A hidden Markov model reliably characterizes ketamine-induced spectral dynamics in macaque local field potentials and human electroencephalograms. - Indie C. Garwood; Sourish Chakravarty; Jacob A. Donoghue; Meredith Mahnke; Pegah Kahali; Shubham Chamadia; Oluwaseun Akeju; Earl K. Miller; Emery N. Brown (PLoS Comput. Biol., 2021)

Propofol Anesthesia Alters Cortical Traveling Waves. - Sayak Bhattacharya; Jacob A. Donoghue; Meredith Mahnke; Scott L. Brincat; Emery N. Brown; Earl K. Miller (J. Cogn. Neurosci., 2022)

Beyond dimension reduction: Stable electric fields emerge from and allow representational drift. - Dimitris A. Pinotsis; Earl K. Miller (NeuroImage, 2022)

Traveling waves in the prefrontal cortex during working memory. - Sayak Bhattacharya; Scott L. Brincat; Mikael Lundqvist; Earl K. Miller (PLoS Comput. Biol., 2022)

Robust and brain-like working memory through short-term synaptic plasticity. - Leo Kozachkov; John Tauber; Mikael Lundqvist; Scott L. Brincat; Jean-Jacques E. Slotine; Earl K. Miller (PLoS Comput. Biol., 2022)

Working Memory Is Complex and Dynamic, Like Your Thoughts. - Timothy J. Buschman; Earl K. Miller (J. Cogn. Neurosci., 2023)

A physical neural mass model framework for the analysis of oscillatory generators from laminar electrophysiological recordings. - Roser Sanchez-Todo; André M. Bastos; Edmundo Lopez-Sola; Borja Mercadal; Emiliano Santarnecchi; Earl K. Miller; Gustavo Deco; Giulio Ruffini (NeuroImage, 2023)

Propofol-mediated Unconsciousness Disrupts Progression of Sensory Signals through the Cortical Hierarchy. - John Tauber; Scott L. Brincat; Emily P. Stephen; Jacob A. Donoghue; Leo Kozachkov; Emery N. Brown; Earl K. Miller (J. Cogn. Neurosci., 2024)

Differentiable Optimization of Similarity Scores Between Models and Brains. - Nathan Cloos; Moufan Li; Markus Siegel; Scott L. Brincat; Earl K. Miller; Guangyu Robert Yang; Christopher J. Cueva (ICLR, 2025)

Characterizing control between interacting subsystems with deep Jacobian estimation. - Adam Eisen; Mitchell Ostrow; Sarthak Chandra; Leo Kozachkov; Earl K. Miller; Ila R. Fiete (CoRR, 2025)

Scientific Machine Learning of Chaotic Systems Discovers Governing Equations for Neural Populations. - Anthony G. Chesebro; David Hofmann; Vaibhav Dixit; Earl K. Miller; Richard H. Granger; Alan Edelman; Christopher Vincent Rackauckas; Lilianne R. Mujica-Parodi; Helmut H. Strey (CoRR, 2025)