Evolutionary rate variation and RNA secondary structure prediction. - Bjarne Knudsen; Ebbe Sloth Andersen; Christian K. Damgaard; Jørgen Kjems; Jan Gorodkin (Comput. Biol. Chem., 2004)

The tmRDB and SRPDB resources. - Ebbe Sloth Andersen; Magnus Alm Rosenblad; Niels Larsen; Jesper Cairo Westergaard; Jody Burks; Iwona K. Wower; Jacek Wower; Jan Gorodkin; Tore Samuelsson; Christian Zwieb (Nucleic Acids Res., 2006)

Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars. - Zsuzsanna Sükösd; Bjarne Knudsen; Morten Vaerum; Jørgen Kjems; Ebbe Sloth Andersen (BMC Bioinform., 2011)

Design Principles for Single-Stranded RNA Origami Structures. - Cody W. Geary; Ebbe Sloth Andersen (DNA, 2014)

Seeing Streptococcus pneumoniae, a Common Killer Bacteria. - Rikke Schmidt Kjærgaard; Ebbe Sloth Andersen (EVA, 2014)