Simulation and Steady-State Optimization of Integrated Biochemical Systems: Theory and Application in Biotechnology. - Eberhard O. Voit; Néstor V. Torres (EUROSIM, 1995)

Biochemical systems analysis of genome-wide expression data. - Eberhard O. Voit; Tomas Radivoyevitch (Bioinform., 2000)

A 7th-grade science project casts doubt on the standard explanation of the Gaussian plume model for seepage through soil. - Benedict F. Voit; Eberhard O. Voit (Environ. Model. Softw., 2000)

Solution of a two-point boundary value model of immobilized enzyme reactions, using an S-system-based root-finding method. - Fumihide Shiraishi; Eberhard O. Voit (Appl. Math. Comput., 2002)

A mixed integer moving horizon formulation for prioritized objective inferential control of a bioprocess system. - C. E. Long; Eberhard O. Voit; Edward P. Gatzke (ACC, 2003)

Decoupling dynamical systems for pathway identification from metabolic profiles. - Eberhard O. Voit; Jonas S. Almeida (Bioinform., 2004)

Challenges for the identification of biological systems from in vivo time series data. - Eberhard O. Voit; Simeone Marino; Raman Lall (Silico Biol., 2004)

Parameter estimation in modulated, unbranched reaction chains within biochemical systems. - Raman Lall; Eberhard O. Voit (Comput. Biol. Chem., 2005)

A multivariate prediction model for microarray cross-hybridization. - Yian Ann Chen; Cheng-Chung Chou; Xinghua Lu; Elizabeth H. Slate; Konan Peck; Wenying Xu; Eberhard O. Voit; Jonas S. Almeida (BMC Bioinform., 2006)

GS-distributions: A new family of distributions for continuous unimodal variables. - J. M. Muiño; Eberhard O. Voit; Albert Sorribas (Comput. Stat. Data Anal., 2006)

Construction of bivariate S-distributions with copulas. - Lining Yu; Eberhard O. Voit (Comput. Stat. Data Anal., 2006)

An Automated Procedure for the Extraction of Metabolic Network Information from Time Series Data. - Simeone Marino; Eberhard O. Voit (J. Bioinform. Comput. Biol., 2006)

Automated smoother for the numerical decoupling of dynamics models. - Marco Vilela; Carlos Cristiano H. Borges; Susana Vinga; Ana Tereza Ribeiro de Vasconcelos; Helena Santos; Eberhard O. Voit; Jonas S. Almeida (BMC Bioinform., 2007)

System estimation from metabolic time-series data. - Gautam Goel; I-Chun Chou; Eberhard O. Voit (Bioinform., 2008)

Parameter optimization in S-system models. - Marco Vilela; I-Chun Chou; Susana Vinga; Ana Tereza Ribeiro de Vasconcelos; Eberhard O. Voit; Jonas S. Almeida (BMC Syst. Biol., 2008)

Estimating parameters for generalized mass action models with connectivity information. - Chih-Lung Ko; Eberhard O. Voit; Feng-Sheng Wang (BMC Bioinform., 2009)

Identification of neutral biochemical network models from time series data. - Marco Vilela; Susana Vinga; Marco Maia; Eberhard O. Voit; Jonas S. Almeida (BMC Syst. Biol., 2009)

Integrative biological systems modeling: challenges and opportunities. - Jialiang Wu; Eberhard Voit (Frontiers Comput. Sci. China, 2009)

Hybrid Modeling in Biochemical Systems Theory by Means of Functional Petri Nets. - Jialiang Wu; Eberhard Voit (J. Bioinform. Comput. Biol., 2009)

The internal state of medium spiny neurons varies in response to different input signals. - Zhen Qi; Gary W. Miller; Eberhard O. Voit (BMC Syst. Biol., 2010)

Impact of Delays and Noise on Dopamine Signal Transduction. - Jialiang Wu; Zhen Qi; Eberhard O. Voit (Silico Biol., 2010)

The role of systems modeling in drug discovery and predictive health. - Eberhard O. Voit (J. Cheminformatics, 2010)

Statistical Inference Methods for Sparse Biological Time Series Data. - Juliet Ndukum; Luís L. Fonseca; Helena Santos; Eberhard O. Voit; Susmita Datta (BMC Syst. Biol., 2011)

Constructing stochastic models from deterministic process equations by propensity adjustment. - Jialiang Wu; Brani Vidakovic; Eberhard O. Voit (BMC Syst. Biol., 2011)

Integrative Analysis of Transgenic Alfalfa (Medicago sativa L.) Suggests New Metabolic Control Mechanisms for Monolignol Biosynthesis. - Yun Lee; Fang Chen; Lina Gallego-Giraldo; Richard A. Dixon; Eberhard O. Voit (PLoS Comput. Biol., 2011)

Estimation of dynamic flux profiles from metabolic time series data. - I-Chun Chou; Eberhard O. Voit (BMC Syst. Biol., 2012)

Functional Analysis of Metabolic Channeling and Regulation in Lignin Biosynthesis: A Computational Approach. - Yun Lee; Luis Escamilla-Treviño; Richard A. Dixon; Eberhard O. Voit (PLoS Comput. Biol., 2012)

Function and design of the Nox1 system in vascular smooth muscle cells. - Weiwei Yin; Eberhard O. Voit (BMC Syst. Biol., 2013)

Coordination of Rapid Sphingolipid Responses to Heat Stress in Yeast. - Po-Wei Chen; Luís L. Fonseca; Yusuf A. Hannun; Eberhard O. Voit (PLoS Comput. Biol., 2013)

A U-system approach for predicting metabolic behaviors and responses based on an alleged metabolic reaction network. - Kansuporn Sriyudthsak; Yuji Sawada; Yukako Chiba; Yui Yamashita; Shigehiko Kanaya; Hitoshi Onouchi; Toru Fujiwara; Satoshi Naito; Eberhard O. Voit; Fumihide Shiraishi; Masami Y. Hirai (BMC Syst. Biol., 2014)

A constrained wavelet smoother for pathway identification tasks in systems biology. - Sepideh Dolatshahi; Brani Vidakovic; Eberhard O. Voit (Comput. Chem. Eng., 2014)

An Efficient and Very Accurate Method for Calculating Steady-State Sensitivities in Metabolic Reaction Systems. - Fumihide Shiraishi; Erika Yoshida; Eberhard O. Voit (IEEE ACM Trans. Comput. Biol. Bioinform., 2014)

Dynamics of the Heat Stress Response of Ceramides with Different Fatty-Acyl Chain Lengths in Baker's Yeast. - Po-Wei Chen; Luís L. Fonseca; Yusuf A. Hannun; Eberhard O. Voit (PLoS Comput. Biol., 2015)

150 Years of the Mass Action Law. - Eberhard O. Voit; Harald A. Martens; Stig W. Omholt (PLoS Comput. Biol., 2015)

Stepwise inference of likely dynamic flux distributions from metabolic time series data. - Mojdeh Faraji; Eberhard O. Voit (Bioinform., 2017)

Strategies for Comparing Metabolic Profiles: Implications for the Inference of Biochemical Mechanisms from Metabolomics Data. - Zhen Qi; Eberhard O. Voit (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

Metrics for regulated biochemical pathway systems. - Jacob D. Davis; Eberhard O. Voit (Bioinform., 2019)

Agent-based modeling of morphogenetic systems: Advantages and challenges. - Chad M. Glen; Melissa L. Kemp; Eberhard O. Voit (PLoS Comput. Biol., 2019)

Perspective: Dimensions of the scientific method. - Eberhard O. Voit (PLoS Comput. Biol., 2019)

Separable Nonlinear Least-Squares Parameter Estimation for Complex Dynamic Systems. - Itai Dattner; Harold J. Ship; Eberhard O. Voit (Complex., 2020)

A model of dopamine and serotonin-kynurenine metabolism in cortisolemia: Implications for depression. - Felipe Dalvi-Garcia; Luís L. Fonseca; Ana Tereza Ribeiro de Vasconcelos; Cecilia Hedin-Pereira; Eberhard O. Voit (PLoS Comput. Biol., 2021)

Inference of dynamic interaction networks: A comparison between Lotka-Volterra and multivariate autoregressive models. - Daniel V. Olivença; Jacob D. Davis; Eberhard O. Voit (Frontiers Bioinform., 2022)

Polycraft World AI Lab (PAL): An Extensible Platform for Evaluating Artificial Intelligence Agents. - Stephen A. Goss; Robert J. Steininger; Dhruv Narayanan; Daniel V. Olivença; Yutong Sun; Peng Qiu; Jim Amato; Eberhard O. Voit; Walter E. Voit; Eric J. Kildebeck (CoRR, 2023)

Analysis of systemic effects of dioxin on human health through template-and-anchor modeling. - Carla M. Kumbale; Qiang Zhang; Eberhard O. Voit (PLoS Comput. Biol., 2025)