An exact parallel algorithm to compare very long biological sequences in clusters of workstations. - Azzedine Boukerche; Alba Cristina Magalhaes Alves de Melo; Edans Flavius de Oliveira Sandes; Mauricio Ayala-Rincón (Clust. Comput., 2007)

CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences. - Edans Flavius de Oliveira Sandes; Alba Cristina Magalhaes Alves de Melo (PPoPP, 2010)

Smith-Waterman Alignment of Huge Sequences with GPU in Linear Space. - Edans Flavius de Oliveira Sandes; Alba Cristina Magalhaes Alves de Melo (IPDPS, 2011)

Record Route Elimination (RRE): An Energy-Efficient Broadcast Algorithm. - Edans Flavius de Oliveira Sandes; Jacir Luiz Bordim; Alba Cristina Magalhaes Alves de Melo; Yasuaki Ito (ICNC, 2012)

Logical Model of Relationship for Online Social Networks and Performance Optimizing of Queries - WISE 2012 Challenge - T1: Performance Track Scalability Winner. - Edans Flavius de Oliveira Sandes; Li Weigang 001; Alba Cristina Magalhaes Alves de Melo (WISE, 2012)

A Pipeline to Characterize Virulence Factors in Mycobacterium Massiliense Genome. - Guilherme Menegói; Tainá Raiol; João Victor de Araújo Oliveira; Edans Flavius de Oliveira Sandes; Alba Cristina Magalhaes Alves de Melo; Andrea Queiroz Maranhão; Ildinete Silva-Pereira; Anamélia Lorenzetti Bocca; Ana Paula Junqueira-Kipnis; Maria Emília M. T. Walter; André Kipnis; Marcelo de Macedo Brígido (BSB, 2013)

Retrieving Smith-Waterman Alignments with Optimizations for Megabase Biological Sequences Using GPU. - Edans Flavius de Oliveira Sandes; Alba Cristina Magalhaes Alves de Melo (IEEE Trans. Parallel Distributed Syst., 2013)

CUDAlign 3.0: Parallel Biological Sequence Comparison in Large GPU Clusters. - Edans F. de O. Sandes; Guillermo Miranda; Alba Cristina Magalhaes Alves de Melo; Xavier Martorell; Eduard Ayguadé (CCGRID, 2014)

Fine-grain parallel megabase sequence comparison with multiple heterogeneous GPUs. - Edans F. de O. Sandes; Guillermo Miranda; Alba Cristina Magalhaes Alves de Melo; Xavier Martorell; Eduard Ayguadé (PPoPP, 2014)

An agent-based solution for dynamic multi-node wavefront balancing in biological sequence comparison. - Edans Flavius de Oliveira Sandes; Célia Ghedini Ralha; Alba Cristina Magalhaes Alves de Melo (Expert Syst. Appl., 2014)

Querying dynamic communities in online social networks. - Li Weigang 001; Edans F. de O. Sandes; Jianya Zheng; Alba Cristina Magalhaes Alves de Melo; Lorna Uden (J. Zhejiang Univ. Sci. C, 2014)

Parallel Megabase DNA Sequence Comparison with OpenCL. - Marco Antonio C. de Figueiredo; Edans F. de O. Sandes; Alba Cristina Magalhaes Alves de Melo (HiPC, 2015)

Algoritmos paralelos exatos e otimizações para alinhamento de sequências biológicas longas em plataformas de alto desempenho. - Edans Flavius de Oliveira Sandes (2015)

Parallel Optimal Pairwise Biological Sequence Comparison: Algorithms, Platforms, and Classification. - Edans Flavius de Oliveira Sandes; Azzedine Boukerche; Alba Cristina Magalhaes Alves de Melo (ACM Comput. Surv., 2016)

MASA: A Multiplatform Architecture for Sequence Aligners with Block Pruning. - Edans Flavius de Oliveira Sandes; Guillermo Miranda; Xavier Martorell; Eduard Ayguadé; George Teodoro; Alba Cristina Magalhaes Alves de Melo (ACM Trans. Parallel Comput., 2016)

CUDAlign 4.0: Incremental Speculative Traceback for Exact Chromosome-Wide Alignment in GPU Clusters. - Edans Flavius de Oliveira Sandes; Guillermo Miranda; Xavier Martorell; Eduard Ayguadé; George Teodoro; Alba Cristina Magalhaes Alves de Melo (IEEE Trans. Parallel Distributed Syst., 2016)

Parallel Biological Sequence Comparison in Linear Space with Multiple Adjustable Bands. - Gabriel H. G. Silva; Edans F. de O. Sandes; George Teodoro; Alba C. M. A. Melo (AlCoB, 2017)

Smith-Waterman Acceleration in Multi-GPUs: A Performance per Watt Analysis. - Jesús Pérez Serrano; Edans Flavius de Oliveira Sandes; Alba Cristina Magalhaes Alves de Melo; Manuel Ujaldón (IWBBIO (2), 2017)

DNA sequences alignment in multi-GPUs: acceleration and energy payoff. - Jesús Pérez Serrano; Edans F. de O. Sandes; Alba Cristina Magalhaes Alves de Melo; Manuel Ujaldón (BMC Bioinform., 2018)

Formalization of Block Pruning: Reducing the Number of Cells Computed in Exact Biological Sequence Comparison Algorithms. - Edans Flavius de Oliveira Sandes; George Luiz Medeiros Teodoro; Maria Emília M. T. Walter; Xavier Martorell; Eduard Ayguadé; Alba Cristina Magalhaes Alves de Melo (Comput. J., 2018)

MASA-OpenCL: Parallel pruned comparison of long DNA sequences with OpenCL. - Marco Antonio C. de Figueiredo; Edans Flavius de Oliveira Sandes; Genaína Nunes Rodrigues; George Luiz Medeiros Teodoro; Alba Cristina Magalhaes Alves de Melo (Concurr. Comput. Pract. Exp., 2019)

Using Multiple Fickett Bands to Accelerate Biological Sequence Comparisons. - Gabriel H. G. Silva; Edans F. de O. Sandes; George Teodoro; Alba C. M. A. Melo (J. Comput. Biol., 2019)

Parallel Comparison of Huge DNA Sequences in Multiple GPUs with Block Pruning. - Marco Antonio C. de Figueiredo; Edans Flavius de Oliveira Sandes; George Teodoro; Alba C. M. A. Melo (PDP, 2020)

Bitmap filter: Speeding up exact set similarity joins with bitwise operations. - Edans F. de O. Sandes; George Luiz Medeiros Teodoro; Alba C. M. A. Melo (Inf. Syst., 2020)

Parallel Fine-Grained Comparison of Long DNA Sequences in Homogeneous and Heterogeneous GPU Platforms With Pruning. - Marco Antonio C. de Figueiredo; João Paulo Navarro; Edans Flavius de Oliveira Sandes; George Teodoro; Alba C. M. A. Melo (IEEE Trans. Parallel Distributed Syst., 2021)

JurisTCU: A Brazilian Portuguese Information Retrieval Dataset with Query Relevance Judgments. - Leandro Carísio Fernandes; Leandro dos Santos Ribeiro; Marcos Vinícius Borela de Castro; Leonardo Augusto da Silva Pacheco; Edans Flavius de Oliveira Sandes (CoRR, 2025)