Non-rigid Registration of 3D Multi-channel Microscopy Images of Cell Nuclei. - Siwei Yang; Daniela Köhler; Kathrin Teller; Thomas Cremer; Patricia Le Baccon; Edith Heard; Roland Eils; Karl Rohr (MICCAI (1), 2006)

Non-rigid Temporal Alignment of 2D and 3D Multi-channel Microscopy Image Sequences of Human Cells. - Il-Han Kim; Siwei Yang; Patricia Le Baccon; Edith Heard; Constantin Kappel; Roland Eils; Karl Rohr (Bildverarbeitung für die Medizin, 2007)

Non-Rigid Temporal Registration of 2d and 3d Multi-Channel Microscopy Image Sequences of Human Cells. - Il-Han Kim; Siwei Yang; Patricia Le Baccon; Edith Heard; Yi-Chun Chen; David L. Spector; Constantin Kappel; Roland Eils; Karl Rohr (ISBI, 2007)

Nonrigid Registration of 3-D Multichannel Microscopy Images of Cell Nuclei. - Siwei Yang; Daniela Köhler; Kathrin Teller; Thomas Cremer; Patricia Le Baccon; Edith Heard; Roland Eils; Karl Rohr (IEEE Trans. Image Process., 2008)

girafe - an R/Bioconductor package for functional exploration of aligned next-generation sequencing reads. - Joern Toedling; Constance Ciaudo; Olivier Voinnet; Edith Heard; Emmanuel Barillot (Bioinform., 2010)

ncPRO-seq: a tool for annotation and profiling of ncRNAs in sRNA-seq data. - Chong-Jian Chen; Nicolas Servant; Joern Toedling; Alexis Sarazin; Antonin Marchais; Evelyne Duvernois-Berthet; Valérie Cognat; Vincent Colot; Olivier Voinnet; Edith Heard; Constance Ciaudo; Emmanuel Barillot (Bioinform., 2012)

HiTC: exploration of high-throughput 'C' experiments. - Nicolas Servant; Bryan R. Lajoie; Elphège P. Nora; Luca Giorgetti; Chong-Jian Chen; Edith Heard; Job Dekker; Emmanuel Barillot (Bioinform., 2012)

The pluripotent genome in three dimensions is shaped around pluripotency factors. - Elzo de Wit; Britta A. M. Bouwman; Yun Zhu; Petra Klous; Erik Splinter; Marjon J. A. M. Verstegen; Peter H. L. Krijger; Nicola Festuccia; Elphège P. Nora; Maaike Welling; Edith Heard; Niels Geijsen; et al. (Nat., 2013)

MonteGrappa: An iterative Monte Carlo program to optimize biomolecular potentials in simplified models. - Guido Tiana; Fulgencia Villa; Y. Zhan; Riccardo Capelli; Cristina Paissoni; Pietro Sormanni; Edith Heard; Luca Giorgetti; R. Meloni (Comput. Phys. Commun., 2015)

Effective normalization for copy number variation in Hi-C data. - Nicolas Servant; Nelle Varoquaux; Edith Heard; Emmanuel Barillot; Jean-Philippe Vert (BMC Bioinform., 2018)