Multiple sequence alignment as a sequence-to-sequence learning problem. - Edo Dotan; Yonatan Belinkov; Oren Avram; Elya Wygoda; Noa Ecker; Michael Alburquerque; Omri Keren; Gil Loewenthal; Tal Pupko (ICLR, 2023)

GenomeFLTR: filtering reads made easy. - Edo Dotan; Michael Alburquerque; Elya Wygoda; Dorothée Huchon; Tal Pupko (Nucleic Acids Res., 2023)

Effect of tokenization on transformers for biological sequences. - Edo Dotan; Gal Jaschek; Tal Pupko; Yonatan Belinkov (Bioinform., 2024)