Controle de Fluxo de Trabalho em Laboratórios de Evolução Molecular. - Carlos N. Fischer; Ivan Guilherme; Maurício Bacci Júnior; Celso Takimoto; Eduardo P. Costa; Marcel Cayres (WOB, 2004)

Comparing Several Approaches for Hierarchical Classification of Proteins with Decision Trees. - Eduardo P. Costa; Ana Carolina Lorena; André Carlos Ponce de Leon Ferreira de Carvalho; Alex Alves Freitas; Nicholas Holden (BSB, 2007)

Top-Down Hierarchical Ensembles of Classifiers for Predicting G-Protein-Coupled-Receptor Functions. - Eduardo P. Costa; Ana Carolina Lorena; André C. P. L. F. de Carvalho; Alex Alves Freitas (BSB, 2008)

Top-Down Induction of Phylogenetic Trees. - Celine Vens; Eduardo P. Costa; Hendrik Blockeel (EvoBIO, 2010)

Estimating Prediction Certainty in Decision Trees. - Eduardo P. Costa; Sicco Verwer; Hendrik Blockeel (IDA, 2013)

PIUS: peptide identification by unbiased search. - Eduardo P. Costa; Gerben Menschaert; Walter Luyten; Kurt De Grave; Jan Ramon (Bioinform., 2013)

Algorithms for Analyzing Biological Sequences (Algoritmen voor de analyse van biologische sequenties). - Eduardo P. Costa (2013)

Learning HMMs for nucleotide sequences from amino acid alignments. - Carlos N. Fischer; Claudia M. A. Carareto; Renato Augusto Corrêa dos Santos; Ricardo Cerri; Eduardo P. Costa; Leander Schietgat; Celine Vens (Bioinform., 2015)

Enhancing intelligence in multimodal emotion assessments. - Vinícius Pereira Gonçalves; Eduardo P. Costa; Alan Valejo; Geraldo P. R. Filho; Thienne M. Johnson; Gustavo Pessin; Jó Ueyama (Appl. Intell., 2017)

A machine learning based framework to identify and classify long terminal repeat retrotransposons. - Leander Schietgat; Celine Vens; Ricardo Cerri; Carlos N. Fischer; Eduardo P. Costa; Jan Ramon; Claudia M. A. Carareto; Hendrik Blockeel (PLoS Comput. Biol., 2018)