A Projective Brane Calculus with Activate, Bud and Mate as Primitive Actions. - Maria Pamela C. David; Johnrob Y. Bantang; Eduardo R. Mendoza (Trans. Comp. Sys. Biology, 2009)

Parameter estimation with term-wise decomposition in biochemical network GMA models by hybrid regularized Least Squares-Particle Swarm Optimization. - Prospero C. Naval; Luis G. Sison; Eduardo R. Mendoza (IEEE Congress on Evolutionary Computation, 2010)

A discrete Petri net model for cephalostatin-induced apoptosis in leukemic cells. - Eva M. Rodriguez; Anita Rudy; Ricardo C. H. del Rosario; Angelika M. Vollmar; Eduardo R. Mendoza (Nat. Comput., 2011)

Robustness in Power-Law Kinetic Systems with Reactant-Determined Interactions. - Noel Fortun; Angelyn Lao; Luis F. Razon; Eduardo R. Mendoza (JCDCGGG, 2018)

A reaction network approach to modeling carbon dioxide removal systems. - Noel Fortun; Piolo Gaspar; Editha Jose; Angelyn Lao; Eduardo R. Mendoza; Luis F. Razon (CoRR, 2024)