An enhanced MITOMAP with a global mtDNA mutational phylogeny. - Eduardo Ruiz-Pesini; Marie T. Lott; Vincent Procaccio; Jason C. Poole; Marty C. Brandon; Dan Mishmar; Christina Yi; James Kreuziger; Pierre Baldi; Douglas C. Wallace (Nucleic Acids Res., 2007)

Rebooting the human mitochondrial phylogeny: an automated and scalable methodology with expert knowledge. - Roberto Blanco; Elvira Mayordomo; Julio Montoya; Eduardo Ruiz-Pesini (BMC Bioinform., 2011)

PHYSER: An Algorithm to Detect Sequencing Errors from Phylogenetic Information. - Jorge Álvarez-Jarreta; Elvira Mayordomo; Eduardo Ruiz-Pesini (PACBB, 2012)

MEvoLib v1.0: the first molecular evolution library for Python. - Jorge Álvarez-Jarreta; Eduardo Ruiz-Pesini (BMC Bioinform., 2016)

Machine learning classifier for identification of damaging missense mutations exclusive to human mitochondrial DNA-encoded polypeptides. - Antonio Martín-Navarro; Andrés Gaudioso-Simón; Jorge Álvarez-Jarreta; Julio Montoya; Elvira Mayordomo; Eduardo Ruiz-Pesini (BMC Bioinform., 2017)