Quantum chemical characterization of the cytosine: 2-Aminopurine base pair. - Edward C. Sherer; Christopher J. Cramer (J. Comput. Chem., 2001)

Fast approximate methods for calculating nucleic acid base pair interaction energies. - Edward C. Sherer; Darrin M. York; Christopher J. Cramer (J. Comput. Chem., 2003)

Modeling a Crowdsourced Definition of Molecular Complexity. - Robert P. Sheridan; Nicolas Zorn; Edward C. Sherer; Louis-Charles Campeau; Charlie (Zhenyu) Chang; Jared Cumming; Matthew L. Maddess; Philippe G. Nantermet; Christopher J. Sinz; Paul D. O'Shea (J. Chem. Inf. Model., 2014)

Heterocyclic Regioisomer Enumeration (HREMS): A Cheminformatics Design Tool. - Sriram Tyagarajan; Christopher T. Lowden; Zhengwei Peng; Kevin D. Dykstra; Edward C. Sherer; Shane W. Krska (J. Chem. Inf. Model., 2015)

The evolution of drug design at Merck Research Laboratories. - Frank K. Brown; Edward C. Sherer; Scott A. Johnson; M. Katharine Holloway; Bradley Sherborne (J. Comput. Aided Mol. Des., 2017)

Complex macrocycle exploration: parallel, heuristic, and constraint-based conformer generation using ForceGen. - Ajay N. Jain; Ann E. Cleves; Qi Gao; Xiao Wang; Yizhou Liu; Edward C. Sherer; Mikhail Y. Reibarkh (J. Comput. Aided Mol. Des., 2019)

Deep Dive into Machine Learning Models for Protein Engineering. - Yuting Xu; Deeptak Verma; Robert P. Sheridan; Andy Liaw; Junshui Ma; Nicholas M. Marshall; John McIntosh; Edward C. Sherer; Vladimir Svetnik; Jennifer M. Johnston (J. Chem. Inf. Model., 2020)

Dedenser: A Python Package for Clustering and Downsampling Chemical Libraries. - Armen G. Beck; Jonathan Fine; Yu-hong Lam; Edward C. Sherer; Erik L. Regalado; Pankaj Aggarwal (J. Chem. Inf. Model., 2025)