ssbio: a Python framework for structural systems biology. - Nathan Mih; Elizabeth Brunk; Ke Chen; Edward Catoiu; Anand Sastry 002; Erol S. Kavvas; Jonathan M. Monk; Zhen Zhang; Bernhard O. Palsson (Bioinform., 2018)

Reframing gene essentiality in terms of adaptive flexibility. - Gabriela I. Guzmán; Connor A. Olson; Ying Hefner; Patrick V. Phaneuf; Edward Catoiu; Lais B. Crepaldi; Lucas Goldschmidt Micas; Bernhard O. Palsson; Adam M. Feist (BMC Syst. Biol., 2018)

COBRAme: A computational framework for genome-scale models of metabolism and gene expression. - Colton J. Lloyd; Ali Ebrahim; Laurence Yang 001; Zachary A. King; Edward Catoiu; Edward J. O'Brien; Joanne K. Liu; Bernhard O. Palsson (PLoS Comput. Biol., 2018)

Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomes. - Nathan Mih; Jonathan M. Monk; Xin Fang; Edward Catoiu; David Heckmann; Laurence Yang 001; Bernhard O. Palsson (BMC Bioinform., 2020)