Exploration of Short Reads Genome Mapping in Hardware. - Edward Fernandez; Walid A. Najjar; Elena Yavorska Harris; Stefano Lonardi (FPL, 2010)

String Matching in Hardware Using the FM-Index. - Edward Fernandez; Walid A. Najjar; Stefano Lonardi (FCCM, 2011)

Multithreaded FPGA acceleration of DNA sequence mapping. - Edward Fernandez; Walid A. Najjar; Stefano Lonardi; Jason R. Villarreal (HPEC, 2012)

FHAST: FPGA-Based Acceleration of Bowtie in Hardware. - Edward B. Fernandez; Jason R. Villarreal; Stefano Lonardi; Walid A. Najjar (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)