Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale. - Joanne K. Liu; Edward J. O'Brien; Joshua A. Lerman; Karsten Zengler; Bernhard O. Palsson; Adam M. Feist (BMC Syst. Biol., 2014)

Systems biology of the structural proteome. - Elizabeth Brunk; Nathan Mih; Jonathan Monk; Zhen Zhang; Edward J. O'Brien; Spencer E. Bliven; Ke Chen; Roger L. Chang; Philip E. Bourne; Bernhard O. Palsson (BMC Syst. Biol., 2016)

Quantification and Classification of E. coli Proteome Utilization and Unused Protein Costs across Environments. - Edward J. O'Brien; Jose Utrilla; Bernhard O. Palsson (PLoS Comput. Biol., 2016)

Fundamentals of inferencing during reading. - Anne E. Cook; Edward J. O'Brien (Lang. Linguistics Compass, 2017)

Teaching & Learning Guide for: Fundamentals of inferencing during reading. - Sarah C. Dean; Wei Wei; Anne E. Cook; Edward J. O'Brien (Lang. Linguistics Compass, 2017)

COBRAme: A computational framework for genome-scale models of metabolism and gene expression. - Colton J. Lloyd; Ali Ebrahim; Laurence Yang 001; Zachary A. King; Edward Catoiu; Edward J. O'Brien; Joanne K. Liu; Bernhard O. Palsson (PLoS Comput. Biol., 2018)

Laboratory evolution reveals a two-dimensional rate-yield tradeoff in microbial metabolism. - Chuankai Cheng; Edward J. O'Brien; Douglas McCloskey; Jose Utrilla; Connor A. Olson; Ryan A. LaCroix; Troy E. Sandberg; Adam M. Feist; Bernhard O. Palsson; Zachary A. King (PLoS Comput. Biol., 2019)

The genetic basis for adaptation of model-designed syntrophic co-cultures. - Colton J. Lloyd; Zachary A. King; Troy E. Sandberg; Ying Hefner; Connor A. Olson; Patrick V. Phaneuf; Edward J. O'Brien; Jon G. Sanders; Rodolfo A. Salido; Karenina Sanders; Caitriona Brennan; Gregory Humphrey; et al. (PLoS Comput. Biol., 2019)