Correspondence analysis of microarray time-course data in case-control design. - Qihua Tan; Klaus Brusgaard; Torben Arvid Kruse; Edward J. Oakeley; Brian A. Hemmings; Henning Beck-Nielsen; Lars Hansen; Michael Gaster (J. Biomed. Informatics, 2004)

PromoterPlot: a graphical display of promoter similarities by pattern recognition. - Alessandro Di Cara; Karsten Schmidt 001; Brian A. Hemmings; Edward J. Oakeley (Nucleic Acids Res., 2005)

Position dependencies in transcription factor binding sites. - Andrija Tomovic; Edward J. Oakeley (Bioinform., 2007)

Quality estimation of multiple sequence alignments by Bayesian hypothesis testing. - Andrija Tomovic; Edward J. Oakeley (Bioinform., 2007)

Transcription factor site dependencies in human, mouse and rat genomes. - Andrija Tomovic; Michael B. Stadler; Edward J. Oakeley (BMC Bioinform., 2009)

DNA-binding factors shape the mouse methylome at distal regulatory regions. - Michael B. Stadler; Rabih Murr; Lukas Burger; Robert Ivanek; Florian Lienert; Anne Schöler; Christiane Wirbelauer; Edward J. Oakeley; Dimos Gaidatzis; Vijay K. Tiwari; Dirk Schübeler (Nat., 2011)

Corrigendum: DNA-binding factors shape the mouse methylome at distal regulatory regions. - Michael B. Stadler; Rabih Murr; Lukas Burger; Robert Ivanek; Florian Lienert; Anne Schöler; Erik van Nimwegen; Christiane Wirbelauer; Edward J. Oakeley; Dimos Gaidatzis; Vijay K. Tiwari; Dirk Schübeler (Nat., 2012)