VISTA : visualizing global DNA sequence alignments of arbitrary length. - Chris Mayor; Michael Brudno; Jody R. Schwartz; Alexander Poliakov; Edward M. Rubin; Kelly A. Frazer; Lior Pachter; Inna Dubchak (Bioinform., 2000)

Phylo-VISTA: interactive visualization of multiple DNA sequence alignments. - Nameeta Y. Shah; Olivier Couronne; Len A. Pennacchio; Michael Brudno; Serafim Batzoglou; E. Wes Bethel; Edward M. Rubin; Bernd Hamann; Inna Dubchak (Bioinform., 2004)

VISTA: computational tools for comparative genomics. - Kelly A. Frazer; Lior Pachter; Alexander Poliakov; Edward M. Rubin; Inna Dubchak (Nucleic Acids Res., 2004)

Reconstructing single genomes from complex microbial communities. - Dongwan D. Kang; Edward M. Rubin; Zhong Wang 003 (it Inf. Technol., 2016)