CURVATURE: software for the analysis of curved DNA. - E. S. Shpigelman; Edward N. Trifonov; Alexander Bolshoy (Comput. Appl. Biosci., 1993)

Gene Splicing: Spatial Separation of Overlapping Messages. - Edward N. Trifonov (Comput. Chem., 1993)

Applicability of the multiple alignment algorithm for detection of weak patterns: periodically distributed DNA pattern as a study case. - Alexander Bolshoy; I. Ioshikhes; Edward N. Trifonov (Comput. Appl. Biosci., 1996)

Interfering contexts of regulatory sequence elements. - Edward N. Trifonov (Comput. Appl. Biosci., 1996)

Sequence Periodicities in Complete Genomes Reflect Supercoiling. - Hanspeter Herzel; Olaf Weiss; Edward N. Trifonov (German Conference on Bioinformatics, 1998)

10-11 bp periodicities in complete genomes reflect protein structure and DNA folding. - Hanspeter Herzel; Olaf Weiss; Edward N. Trifonov (Bioinform., 1999)

Earliest pages of bioinformatics. - Edward N. Trifonov (Bioinform., 2000)

Poetry and prose of the sequences. - Edward N. Trifonov (RECOMB, 2003)

Evolutionary Networks in the Formatted Protein Sequence Space. - Zakharia M. Frenkel; Edward N. Trifonov (J. Comput. Biol., 2007)

FineStr: a web server for single-base-resolution nucleosome positioning. - Idan Gabdank; Danny Barash; Edward N. Trifonov (Bioinform., 2010)

A Novel Technique for Detecting Putative Horizontal Gene Transfer in the Sequence Space. - Sagi Snir; Edward N. Trifonov (J. Comput. Biol., 2010)

On the Observable Transition to Living Matter. - Samanta Pino; Edward N. Trifonov; Ernesto Di Mauro (Genom. Proteom. Bioinform., 2011)

Thirty Years of Multiple Sequence Codes. - Edward N. Trifonov (Genom. Proteom. Bioinform., 2011)