The use of an algorithmic method for small molecule superimpositions in the design of antiviral agents. - Guy Diana; Edward P. Jaeger; Melissa L. Peterson; Adi M. Treasurywala (J. Comput. Aided Mol. Des., 1993)

Conformational searching methods for small molecules. II. Genetic algorithm approach. - Richard S. Judson; Edward P. Jaeger; Adi M. Treasurywala; Melissa L. Peterson (J. Comput. Chem., 1993)

Conformational energy downward driver (CEDD): Characterization and calibration of the method. - Edward P. Jaeger; Melissa L. Peterson; Adi M. Treasurywala (J. Comput. Aided Mol. Des., 1995)

Docking Flexible Molecules: A Case Study of Three Proteins. - Richard S. Judson; Y. T. Tan; E. Mori; C. Melius; Edward P. Jaeger; Adi M. Treasurywala; Alan M. Mathiowetz (J. Comput. Chem., 1995)

Conformational searching methods for small molecules. III. Study of stochastic methods available in SYBYL and MACROMODEL. - Adi M. Treasurywala; Edward P. Jaeger; Melissa L. Peterson (J. Comput. Chem., 1996)

A Cluster-Based Strategy for Assessing the Overlap between Large Chemical Libraries and Its Application to a Recent Acquisition. - Michael F. M. Engels; Alan C. Gibbs; Edward P. Jaeger; Danny Verbinnen; Victor S. Lobanov; Dimitris K. Agrafiotis (J. Chem. Inf. Model., 2006)

Advanced Biological and Chemical Discovery (ABCD): Centralizing Discovery Knowledge in an Inherently Decentralized World. - Dimitris K. Agrafiotis; Simson Alex; Heng Dai; An Derkinderen; Michael Farnum; Peter Gates; Sergei Izrailev; Edward P. Jaeger; Paul Konstant; Albert Leung; Victor S. Lobanov; Patrick Marichal; et al. (J. Chem. Inf. Model., 2007)

Efficient Substructure Searching of Large Chemical Libraries: The ABCD Chemical Cartridge. - Dimitris K. Agrafiotis; Victor S. Lobanov; Maxim Shemanarev; Dmitrii N. Rassokhin; Sergei Izrailev; Edward P. Jaeger; Simson Alex; Michael Farnum (J. Chem. Inf. Model., 2011)