A chemical kinetic basis for measuring translation initiation and elongation rates from ribosome profiling data. - Ajeet K. Sharma; Pietro Sormanni; Nabeel Ahmed; Prajwal Ciryam; Ulrike A. Friedrich; Günter Kramer; Edward P. O'Brien (PLoS Comput. Biol., 2019)

RiboA: a web application to identify ribosome A-site locations in ribosome profiling data. - Danying Shao; Nabeel Ahmed; Nishant Soni; Edward P. O'Brien (BMC Bioinform., 2021)

Incorporating mutational heterogeneity to identify genes that are enriched for synonymous mutations in cancer. - Yiyun Rao; Nabeel Ahmed; Justin R. Pritchard; Edward P. O'Brien (BMC Bioinform., 2023)

It is theoretically possible to avoid misfolding into non-covalent lasso entanglements using small molecule drugs. - Yang Jiang 004; Charlotte M. Deane; Garrett M. Morris; Edward P. O'Brien (PLoS Comput. Biol., 2024)