Asterias: integrated analysis of expression and aCGH data using an open-source, web-based, parallelized software suite. - Ramón Díaz-Uriarte; Andreu Alibés; Edward R. Morrissey; Andrés Cañada; Oscar M. Rueda; Mariana L. Neves (Nucleic Acids Res., 2007)

Pomelo II: finding differentially expressed genes. - Edward R. Morrissey; Ramón Díaz-Uriarte (Nucleic Acids Res., 2009)

On reverse engineering of gene interaction networks using time course data with repeated measurements. - Edward R. Morrissey; Miguel A. Juárez; Katherine J. Denby; Nigel J. Burroughs (Bioinform., 2010)