lga972: a cross-platform application for optimizing LD studies using a genetic algorithm. - Jaime R. Robles; Edwin J. C. G. van den Oord (Bioinform., 2004)

A Theoretical Systems Biology Analysis Suggests Gene-Environment Interaction Effects are Common at the Most Basic Levels of Biological Organization. - Joseph L. McClay; Edwin J. C. G. van den Oord (BMEI (1), 2008)

Estimating the posterior probability that genome-wide association findings are true or false. - József Bukszár; Joseph L. McClay; Edwin J. C. G. van den Oord (Bioinform., 2009)

A multi-dimensional evidence-based candidate gene prioritization approach for complex diseases-schizophrenia as a case. - Jingchun Sun; Peilin Jia; Ayman H. Fanous; Bradley Todd Webb; Edwin J. C. G. van den Oord; Xiangning Chen; József Bukszár; Kenneth S. Kendler; Zhongming Zhao (Bioinform., 2009)

A statistical method for excluding non-variable CpG sites in high-throughput DNA methylation profiling. - Hailong Meng; Andrew R. Joyce; Daniel E. Adkins; Priyadarshi Basu; Yankai Jia; Guoya Li; Tapas K. Sengupta; Barbara K. Zedler; Edward Lenn Murrelle; Edwin J. C. G. van den Oord (BMC Bioinform., 2010)

MethylPCA: a toolkit to control for confounders in methylome-wide association studies. - Wenan Chen; Guimin Gao; Srilaxmi Nerella; Christina M. Hultman; Patrik K. E. Magnusson; Patrick F. Sullivan; Karolina A. Åberg; Edwin J. C. G. van den Oord (BMC Bioinform., 2013)

Estimation of CpG coverage in whole methylome next-generation sequencing studies. - Edwin J. C. G. van den Oord; József Bukszár; Gábor Rudolf; Srilaxmi Nerella; Joseph L. McClay; Lin Y. Xie; Karolina A. Åberg (BMC Bioinform., 2013)

RaMWAS: fast methylome-wide association study pipeline for enrichment platforms. - Andrey A. Shabalin; Mohammad W. Hattab; Shaunna L. Clark; Robin F. Chan; Gaurav Kumar; Karolina A. Åberg; Edwin J. C. G. van den Oord (Bioinform., 2018)

A targeted solution for estimating the cell-type composition of bulk samples. - Edwin J. C. G. van den Oord; Lin Y. Xie; Charles J. Tran; Min Zhao; Karolina A. Åberg (BMC Bioinform., 2021)