Accurate Airway Wall Estimation Using Phase Congruency. - Raúl San José Estépar; George R. Washko; Edwin K. Silverman; John J. Reilly; Ron Kikinis; Carl-Fredrik Westin (MICCAI (2), 2006)

Lung Extraction, Lobe Segmentation and Hierarchical Region Assessment for Quantitative Analysis on High Resolution Computed Tomography Images. - James C. Ross; Raúl San José Estépar; Alejandro A. Díaz 001; Carl-Fredrik Westin; Ron Kikinis; Edwin K. Silverman; George R. Washko (MICCAI (1), 2009)

Automatic Lung Lobe Segmentation Using Particles, Thin Plate Splines, and Maximum a Posteriori Estimation. - James C. Ross; Raúl San José Estépar; Gordon L. Kindlmann; Alejandro A. Díaz 001; Carl-Fredrik Westin; Edwin K. Silverman; George R. Washko (MICCAI (3), 2010)

Peripheral blood gene expression profiles in COPD subjects. - Soumyaroop Bhattacharya; Shivraj Tyagi; Sorachai Srisuma; Dawn L. DeMeo; Steven Shapiro; Raphael Bueno; Edwin K. Silverman; John J. Reilly; Thomas J. Mariani (J. Clin. Bioinform., 2011)

Automatic airway analysis for genome-wide association studies in COPD. - Raúl San José Estépar; James C. Ross; Gordon L. Kindlmann; Alejandro A. Díaz 001; Yuka Okajima; Ron Kikinis; Carl-Fredrik Westin; Edwin K. Silverman; George R. Washko (ISBI, 2012)

'Location, Location, Location': a spatial approach for rare variant analysis and an application to a study on non-syndromic cleft lip with or without cleft palate. - Heide Loehlein Fier; Sungho Won; Dmitry Prokopenko; Taofik AlChawa; Kerstin U. Ludwig; Rolf Fimmers; Edwin K. Silverman; Marcello Pagano; Elisabeth Mangold; Christoph Lange 003 (Bioinform., 2012)

On the simultaneous association analysis of large genomic regions: a massive multi-locus association test. - Dandi Qiao; Michael H. Cho; Heide Loehlein Fier; Per S. Bakke; Amund Gulsvik; Edwin K. Silverman; Christoph Lange 003 (Bioinform., 2014)

Analyzing networks of phenotypes in complex diseases: methodology and applications in COPD. - Jen-hwa Chu; Craig P. Hersh; Peter J. Castaldi; Michael H. Cho; Benjamin A. Raby; Nan M. Laird; Russell Bowler; Stephen I. Rennard; Joseph Loscalzo; John Quackenbush; Edwin K. Silverman (BMC Syst. Biol., 2014)

Sexually-dimorphic targeting of functionally-related genes in COPD. - Kimberly Glass; John Quackenbush; Edwin K. Silverman; Bartolome Celli; Stephen I. Rennard; Guo-Cheng Yuan; Dawn L. DeMeo (BMC Syst. Biol., 2014)

A diVIsive Shuffling Approach (VIStA) for gene expression analysis to identify subtypes in Chronic Obstructive Pulmonary Disease. - Jörg Menche; Amitabh Sharma; Michael H. Cho; Ruth J. Mayer; Stephen I. Rennard; Bartolome Celli; Bruce E. Miller; Nick Locantore; Ruth Tal-Singer; Soumitra Ghosh; Chris Larminie; Glyn Bradley; et al. (BMC Syst. Biol., 2014)

Interpretable Clustering via Discriminative Rectangle Mixture Model. - Junxiang Chen; Yale Chang; Brian D. Hobbs; Peter J. Castaldi; Michael H. Cho; Edwin K. Silverman; Jennifer G. Dy (ICDM, 2016)

Utilizing the Jaccard index to reveal population stratification in sequencing data: a simulation study and an application to the 1000 Genomes Project. - Dmitry Prokopenko; Julian Hecker; Edwin K. Silverman; Marcello Pagano; Markus M. Nöthen; Christian Dina; Christoph Lange 003; Heide Loehlein Fier (Bioinform., 2016)

Clustering from Multiple Uncertain Experts. - Yale Chang; Junxiang Chen; Michael H. Cho; Peter J. Castaldi; Edwin K. Silverman; Jennifer G. Dy (AISTATS, 2017)

Multiple Clustering Views from Multiple Uncertain Experts. - Yale Chang; Junxiang Chen; Michael H. Cho; Peter J. Castaldi; Edwin K. Silverman; Jennifer G. Dy (ICML, 2017)

Clustering with Domain-Specific Usefulness Scores. - Yale Chang; Junxiang Chen; Michael H. Cho; Peter J. Castaldi; Edwin K. Silverman; Jennifer G. Dy (SDM, 2017)

A Bayesian Nonparametric Model for Disease Subtyping: Application to Emphysema Phenotypes. - James C. Ross; Peter J. Castaldi; Michael H. Cho; Junxiang Chen; Yale Chang; Jennifer G. Dy; Edwin K. Silverman; George R. Washko; Raúl San José Estépar (IEEE Trans. Medical Imaging, 2017)

Improved prediction of smoking status via isoform-aware RNA-seq deep learning models. - Zifeng Wang 002; Aria Masoomi; Zhonghui Xu; Adel Boueiz; Sool Lee; Tingting Zhao; Russell Bowler; Michael H. Cho; Edwin K. Silverman; Craig P. Hersh; Jennifer G. Dy; Peter J. Castaldi (PLoS Comput. Biol., 2021)

A fast and efficient smoothing approach to Lasso regression and an application in statistical genetics: polygenic risk scores for chronic obstructive pulmonary disease (COPD). - Georg Hahn; Sharon Marie Lutz; Nilanjana Laha; Michael H. Cho; Edwin K. Silverman; Christoph Lange 003 (Stat. Comput., 2021)

Explanations of Black-Box Models based on Directional Feature Interactions. - Aria Masoomi; Davin Hill; Zhonghui Xu; Craig P. Hersh; Edwin K. Silverman; Peter J. Castaldi; Stratis Ioannidis; Jennifer G. Dy (ICLR, 2022)

Partial correlation network analysis identifies coordinated gene expression within a regional cluster of COPD genome-wide association signals. - Michele Gentili; Kimberly Glass; Enrico Maiorino; Brian D. Hobbs; Zhonghui Xu; Peter J. Castaldi; Michael H. Cho; Craig P. Hersh; Dandi Qiao; Jarrett D. Morrow; Vincent J. Carey; John Platig; et al. (PLoS Comput. Biol., 2024)

Fast computation of the eigensystem of genomic similarity matrices. - Georg Hahn; Sharon Marie Lutz; Julian Hecker; Dmitry Prokopenko; Michael H. Cho; Edwin K. Silverman; Scott T. Weiss; Christoph Lange 003 (BMC Bioinform., 2024)

Enriched phenotypes in rare variant carriers suggest pathogenic mechanisms in rare disease patients. - Lane Fitzsimmons; Maria T. Acosta; David R. Adams; Ben Afzali; Ali Al-Beshri; Eric Allenspach; Aimee Allworth; Raquel L. Alvarez; Justin Alvey; Ashley Andrews; Euan A. Ashley; Carlos A. Bacino; et al. (BioData Min., 2025)

A statistical framework for multi-trait rare variant analysis in large-scale whole-genome sequencing studies. - Xihao Li; Han Chen; Margaret Sunitha Selvaraj; Eric Van Buren; Hufeng Zhou; Yuxuan Wang 008; Ryan Sun; Zachary R. McCaw; Zhi Yu; Min-Zhi Jiang; Daniel DiCorpo; Sheila M. Gaynor; et al. (Nat. Comput. Sci., 2025)