Evolutionary algorithms for automated drug design towards target molecule properties. - Johannes W. Kruisselbrink; Thomas Bäck; Adriaan P. IJzerman; Eelke van der Horst (GECCO, 2008)

Combining Aggregation with Pareto Optimization: A Case Study in Evolutionary Molecular Design. - Johannes W. Kruisselbrink; Michael T. M. Emmerich; Thomas Bäck; Andreas Bender 002; Adriaan P. IJzerman; Eelke van der Horst (EMO, 2009)

Enhancing search space diversity in multi-objective evolutionary drug molecule design using niching. - Johannes W. Kruisselbrink; Alexander Aleman; Michael T. M. Emmerich; Adriaan P. IJzerman; Andreas Bender 002; Thomas Bäck; Eelke van der Horst (GECCO, 2009)

Substructure Mining of GPCR Ligands Reveals Activity-Class Specific Functional Groups in an Unbiased Manner. - Eelke van der Horst; Yasushi Okuno; Andreas Bender 002; Adriaan P. IJzerman (J. Chem. Inf. Model., 2009)

Chemogenomics: Looking at biology through the lens of chemistry. - Munikumar R. Doddareddy; Gerard J. P. van Westen; Eelke van der Horst; Julio E. Peironcely; Frans Corthals; Adriaan P. IJzerman; Michael Emmerich 001; Jeremy L. Jenkins; Andreas Bender 002 (Stat. Anal. Data Min., 2009)

A novel chemogenomics analysis of G protein-coupled receptors (GPCRs) and their ligands: a potential strategy for receptor de-orphanization. - Eelke van der Horst; Julio E. Peironcely; Adriaan P. IJzerman; Margot W. Beukers; Jonathan Robert Lane; Herman W. T. van Vlijmen; Michael T. M. Emmerich; Yasushi Okuno; Andreas Bender 002 (BMC Bioinform., 2010)

Evolutionary design of selective adenosine receptor ligands. - Eelke van der Horst; Johannes W. Kruisselbrink; Alexander Aleman; Michael T. M. Emmerich; Andreas Bender 002; Adriaan P. IJzerman (J. Cheminformatics, 2010)

Multi-Objective Evolutionary Design of Adenosine Receptor Ligands. - Eelke van der Horst; Patricia Marqués-Gallego; Thea Mulder-Krieger; Jacobus van Veldhoven; Johannes W. Kruisselbrink; Alexander Aleman; Michael T. M. Emmerich; Johannes Brussee; Andreas Bender 002; Adriaan P. IJzerman (J. Chem. Inf. Model., 2012)

Workflows and Services for Concept Profile Generation. - Eelke van der Horst; Marco Roos; Kristina M. Hettne (SWAT4LS, 2013)

A Nanopublishing Architecture for Biomedical Data. - Pedro Sernadela; Eelke van der Horst; Mark Thompson 002; Pedro Lopes 002; Marco Roos; José Luís Oliveira (PACBB, 2014)

Genome Annotation using Nanopublications: An Approach to Interoperability of Genetic Data. - Rajaram Kaliyaperumal; Peter Bram 't Hoen; Mark Thompson 002; Eelke van der Horst; Marco Roos (SWAT4LS, 2014)

Bring Your Own Data Workshops: A Mechanism to Aid Data Owners to Comply with Linked Data Best Practices. - Marco Roos; Alasdair J. G. Gray; Andra Waagmeester; Mark Thompson 002; Rajaram Kaliyaperumal; Eelke van der Horst; Barend Mons; Mark D. Wilkinson (SWAT4LS, 2014)

Explain your data by Concept Profile Analysis Web Services. - Kristina M. Hettne; Reinout van Schouwen; Eleni Mina; Eelke van der Horst; Mark Thompson 002; Rajaram Kaliyaperumal; Barend Mons; Erik M. van Mulligen; Jan A. Kors; Marco Roos (F1000Research, 2014)

Multidisciplinary Collaboration to Facilitate Hypotheses Generation in Huntington's Disease. - Eleni Mina; Mark Thompson 002; Kristina M. Hettne; Willeke M. C. van Roon-Mom; Rajaram Kaliyaperumal; Eelke van der Horst; Katherine Wolstencroft; Barend Mons; Marco Roos (e-Science, 2015)

Finding Novel Associations Across Domains Using Linked Data: a Case Study on Genetic Variants Disrupting Transcription Start Sites. - Eelke van der Horst; Rajaram Kaliyaperumal; Zuotian Tatum; Mark Thompson 002; Erik A. Schultes; Eleni Mina; Ivo Fokkema; Johan T. den Dunnen; Marco Roos; Jeroen F. J. Laros; Barend Mons; Kristina M. Hettne; et al. (SWAT4LS, 2015)

Nanopublications for exposing experimental data in the life-sciences: a Huntington's Disease case study. - Eleni Mina; Mark Thompson 002; Rajaram Kaliyaperumal; Jun Zhao 003; Eelke van der Horst; Zuotian Tatum; Kristina M. Hettne; Erik A. Schultes; Barend Mons; Marco Roos (J. Biomed. Semant., 2015)

Recognition of chemical entities: combining dictionary-based and grammar-based approaches. - Saber A. Akhondi; Kristina M. Hettne; Eelke van der Horst; Erik M. van Mulligen; Jan A. Kors (J. Cheminformatics, 2015)

Managing food and microbiome studies data using Fairspace, a flexible and FAIR data management platform. - Ewelina Grudzien; Eelke van der Horst; Frank van den Bergh; Maria H. Traka; Duncan Ng; Falk Hildebrand; Chris T. A. Evelo; Susan L. M. Coort; Duygu Dede Sener; Elisa Cirillo (SWAT4HCLS, 2023)

Bridging clinical and genomic knowledge: An extension of the SPHN RDF Schema for seamless integration and FAIRification of omics data. - Eelke van der Horst; Deepak R. Unni; Femke C. Kopmels; Jan Armida; Vasundra Touré; Wouter Franke; Katrin Crameri; Elisa Cirillo; Sabine Österle (SWAT4HCLS, 2024)