driveR: a novel method for prioritizing cancer driver genes using somatic genomics data. - Ege Ülgen; Osman Ugur Sezerman (BMC Bioinform., 2021)

CogNet: classification of gene expression data based on ranked active-subnetwork-oriented KEGG pathway enrichment analysis. - Malik Yousef; Ege Ülgen; Osman Ugur Sezerman (PeerJ Comput. Sci., 2021)

Novel methods for driver gene and anti-cancer pharmacotherapyprioritization in personalized oncology (Kişiselleştirilmiş onkolojide sürücü gen ve anti-kanser farmakoterapi önceliklendirilmesi için yeni yöntemler) - Ege Ülgen (2022)

PANACEA: network-based methods for pharmacotherapy prioritization in personalized oncology. - Ege Ülgen; Ozan Ozisik; Osman Ugur Sezerman (Bioinform., 2023)