Comparing clustering and pre-processing in taxonomy analysis. - Marc J. Bonder; Sanne Abeln; Egija Zaura; Bernd W. Brandt (Bioinform., 2012)

TaxMan: a server to trim rRNA reference databases and inspect taxonomic coverage. - Bernd W. Brandt; Marc J. Bonder; Susan M. Huse; Egija Zaura (Nucleic Acids Res., 2012)

metaModules identifies key functional subnetworks in microbiome-related disease. - Ali May; Bernd W. Brandt; Mohammed El-Kebir; Gunnar W. Klau; Egija Zaura; Wim Crielaard; Jaap Heringa; Sanne Abeln (Bioinform., 2016)

A new approach to describe the taxonomic structure of microbiome and its application to assess the relationship between microbial niches. - Vincent Y. Pappalardo; Leyla Azarang; Egija Zaura; Bernd W. Brandt; Renée X. de Menezes (BMC Bioinform., 2024)