MUSIDH, multiple use of simulated demographic histories, a novel method to reduce computation time in microsimulation models of infectious diseases. - Egil A. J. Fischer; Sake J. De Vlas; Jan Hendrik Richardus; J. Dik F. Habbema (Comput. Methods Programs Biomed., 2008)

Infection Transmission Ontology: Standardization of Infection Transmission Data. - Elena Slavco; Martine de Vos; Miel Hostens; Jan L. Top; Egil A. J. Fischer (e-Science, 2022)

A Bayesian inference method to estimate transmission trees with multiple introductions; applied to SARS-CoV-2 in Dutch mink farms. - Bastiaan Van der Roest; Martin C. J. Bootsma; Egil A. J. Fischer; Don Klinkenberg; Mirjam E. Kretzschmar (PLoS Comput. Biol., 2023)