On Complexity of Two Dimensional Languages Generated by Transducers. - Egor Dolzhenko; Natasa Jonoska (CIAA, 2008)

Transducer generated arrays of robotic nano-arms. - Egor Dolzhenko; Natasa Jonoska; Nadrian C. Seeman (Nat. Comput., 2010)

Two-Dimensional Languages and Cellular Automata. - Egor Dolzhenko; Natasa Jonoska (Int. J. Found. Comput. Sci., 2012)

Four-regular graphs with rigid vertices associated to DNA recombination. - Jonathan Burns; Egor Dolzhenko; Natasa Jonoska; Tilahun Muche; Masahico Saito (Discret. Appl. Math., 2013)

LUCApedia: a database for the study of ancient life. - Aaron David Goldman; Tess M. Bernhard; Egor Dolzhenko; Laura F. Landweber (Nucleic Acids Res., 2013)

Using beta-binomial regression for high-precision differential methylation analysis in multifactor whole-genome bisulfite sequencing experiments. - Egor Dolzhenko; Andrew D. Smith (BMC Bioinform., 2014)

Invariants of Graphs Modeling Nucleotide Rearrangements. - Egor Dolzhenko; Karin Valencia (Discrete and Topological Models in Molecular Biology, 2014)

Genus Ranges of 4-Regular Rigid Vertex Graphs. - Dorothy Buck; Egor Dolzhenko; Natasa Jonoska; Masahico Saito; Karin Valencia (Electron. J. Comb., 2015)

Modeling runtime enforcement with mandatory results automata. - Egor Dolzhenko; Jay Ligatti; Srikar Reddy (Int. J. Inf. Sec., 2015)

ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions. - Egor Dolzhenko; Viraj Deshpande; Felix Schlesinger; Peter Krusche; Roman Petrovski; Sai Chen; Dorothea Emig-Agius; Andrew Gross; Giuseppe Narzisi; Brett Bowman; Konrad Scheffler; Joke J. F. A van Vugt; et al. (Bioinform., 2019)

Stream-Monitoring Automata. - Hernan M. Palombo; Egor Dolzhenko; Jay Ligatti; Hao Zheng 001 (ICSCA, 2020)